RLG00000034289

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003912
Physical Location & Seq
Forward (+)
40076369 .. 40081225
4857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034289

Sequence Viewer

Length: 768 bp
ATGGTTTACCTGAAAATGTTAGATATGGTAGCCTCTGGCAATCTTGGTTGTGATTACCTCAAGAAAGAGTCAACGAGCGGGGACTTCGGCAACGTCTCGAGAACATCATGGTTGGCTTTGAGGAAGAGAGCTTGGTGTAGAAGTAGAAGTTGGCCACCTCGAACATCTAGTTGGGGTGAGGTTGTTAAAGTCGTCGATGACGACGCCTCGCTTTCTCCGCTCTCAGCCGAAATTAAAGTACTCCCAAGTCTTCATCATCAGCTTTCTCATCTCCCACCTCACCTAACTGTCTCACTCCGTCTAAACATGTCAACCATGACAACTGTGAACGTTCCCTCTCAGTGCATGCTCAGAAATGCACCTAAGATTCAATTCACCAGTTCTATCATTAAGTTCTCATCTCCACTTGGATCTGTGAAGAGTATCTCCAAGTCTTTTGGCTTGAAAGCATCCGCCTCTTACCGAACATCAATGGCAGTATACAAGATTAAGCTGATTGGGCCAGATGGTGAGGAAAACGAGTTTGATGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGAGCTGGGGCGTGCTCCACATGTGCAGGAAAGATGGTAGCAGGTACTGTGGACCAGTCTGATGGTTCCTTCCTTGATGATAACCAAATGAAGGAAGGTTATGTGCTAACCTGCGTCTCATACCCATCTTCAGACTGCGTGATCCGCACTCACAAGGAAAGTGAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

256

Amino Acids

27.89

Weight (kDa)

6.94

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 168 - 240 1.3e-22 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 626, 713
AccBSI CCGCTC 2 cut(s) 78, 220
AccI GTMKAC 1 cut(s) 480
AciI CCGC 4 cut(s) 78, 218, 453, 739
AclI AACGTT 1 cut(s) 330
AclWI GGATC 2 cut(s) 418, 730
AcoI YGGCCR 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 240, 640
AfiI CCNNNNNNNGG 1 cut(s) 685
AflIII ACRYGT 2 cut(s) 306, 614
AgsI TTSAA 2 cut(s) 371, 445
AjuI GAANNNNNNNTTGG 4 cut(s) 133, 154, 165, 186
AluBI AGCT 6 cut(s) 131, 262, 493, 560, 580, 599
AluI AGCT 6 cut(s) 131, 262, 493, 560, 580, 599
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 3 cut(s) 100, 295, 715
AlwI GGATC 2 cut(s) 418, 730
AlwNI CAGNNNCTG 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 152, 500
ApeKI GCWGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 500, 646
AsuHPI GGTGA 4 cut(s) 188, 272, 367, 521
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 646
BalI TGGCCA 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 567
BccI CCATC 4 cut(s) 500, 622, 650, 727
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BcoDI GTCTC 3 cut(s) 100, 295, 715
BfaI CTAG 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 626, 713
BisI GCNGC 1 cut(s) 581
BlsI GCNGC 1 cut(s) 582
BmcAI AGTACT 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 646
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 500, 646
BmiI GGNNCC 1 cut(s) 661
BmsI GCATC 2 cut(s) 458, 517
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse1I ACTGG 2 cut(s) 378, 649
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMII CTCAG 4 cut(s) 237, 353, 364, 552
BseNI ACTGG 2 cut(s) 378, 649
BseXI GCAGC 1 cut(s) 567
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 2 cut(s) 154, 502
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 685
BsmAI GTCTC 3 cut(s) 100, 295, 715
BsmBI CGTCTC 2 cut(s) 100, 715
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 154, 502
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 2 cut(s) 410, 735
BspACI CCGC 4 cut(s) 78, 218, 453, 739
BspANI GGCC 2 cut(s) 154, 502
BspCNI CTCAG 4 cut(s) 236, 352, 363, 553
BspLI GGNNCC 1 cut(s) 661
BspMI ACCTGC 2 cut(s) 626, 713
BspPI GGATC 2 cut(s) 418, 730
BsrBI CCGCTC 2 cut(s) 78, 220
BsrI ACTGG 2 cut(s) 378, 649
BssMI GATC 2 cut(s) 410, 735
BssNAI GTATAC 1 cut(s) 481
BssNI GRCGYC 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 481
Bst4CI ACNGT 4 cut(s) 289, 325, 643, 762
Bst6I CTCTTC 2 cut(s) 119, 413
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 347, 607
BstDEI CTNAG 5 cut(s) 223, 339, 350, 363, 561
BstF5I GGATG 1 cut(s) 449
BstKTI GATC 2 cut(s) 413, 738
BstMAI GTCTC 3 cut(s) 100, 295, 715
BstMBI GATC 2 cut(s) 410, 735
BstMWI GCNNNNNNNGC 4 cut(s) 217, 499, 566, 738
BstNSI RCATGY 3 cut(s) 310, 349, 618
BstV1I GCAGC 1 cut(s) 567
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 410
BstZ17I GTATAC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 154, 502
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 347
BveI ACCTGC 2 cut(s) 626, 713
Cac8I GCNNGC 2 cut(s) 347, 607
CaiI CAGNNNCTG 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 500, 646
CseI GACGC 2 cut(s) 212, 697
Csp6I GTAC 2 cut(s) 239, 639
CviAII CATG 5 cut(s) 108, 307, 316, 346, 615
CviQI GTAC 2 cut(s) 239, 639
DdeI CTNAG 5 cut(s) 223, 339, 350, 363, 561
DpnI GATC 2 cut(s) 412, 737
DpnII GATC 2 cut(s) 410, 735
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 119, 413
EarI CTCTTC 2 cut(s) 119, 413
EciI GGCGGA 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 97
Esp3I CGTCTC 2 cut(s) 100, 715
FaeI CATG 5 cut(s) 111, 310, 319, 349, 618
FaiI YATR 9 cut(s) 26, 109, 308, 317, 347, 481, 616, 696, 715
FaqI GGGAC 1 cut(s) 95
FatI CATG 5 cut(s) 107, 306, 315, 345, 614
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 154, 502
HgaI GACGC 2 cut(s) 212, 697
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 5 cut(s) 111, 310, 319, 349, 618
HincII GTYRAC 2 cut(s) 72, 312
HindII GTYRAC 2 cut(s) 72, 312
HinfI GANTC 4 cut(s) 68, 367, 539, 554
HphI GGTGA 4 cut(s) 188, 272, 367, 521
Hpy166II GTNNAC 7 cut(s) 7, 72, 312, 328, 481, 646, 758
Hpy188I TCNGA 3 cut(s) 353, 655, 727
Hpy188III TCNNGA 4 cut(s) 61, 97, 99, 533
Hpy8I GTNNAC 7 cut(s) 7, 72, 312, 328, 481, 646, 758
Hpy99I CGWCG 2 cut(s) 197, 206
HpyAV CCTTC 3 cut(s) 673, 679, 683
HpyCH4III ACNGT 4 cut(s) 289, 325, 643, 762
HpyCH4IV ACGT 2 cut(s) 93, 330
HpyCH4V TGCA 5 cut(s) 345, 359, 569, 594, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 217, 499, 566, 738
HpyF3I CTNAG 5 cut(s) 223, 339, 350, 363, 561
HpySE526I ACGT 2 cut(s) 93, 330
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 5 cut(s) 111, 310, 319, 349, 618
Kzo9I GATC 2 cut(s) 410, 735
LmnI GCTCC 2 cut(s) 535, 614
Lsp1109I GCAGC 1 cut(s) 567
LweI GCATC 2 cut(s) 458, 517
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 93, 330
MalI GATC 2 cut(s) 412, 737
MbiI CCGCTC 2 cut(s) 78, 220
MboI GATC 2 cut(s) 410, 735
MboII GAAGA 4 cut(s) 136, 242, 430, 714
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 2 cut(s) 231, 371
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 2 cut(s) 77, 533
Mox20I TGGCCA 1 cut(s) 154
MscI TGGCCA 1 cut(s) 154
MseI TTAA 4 cut(s) 186, 234, 390, 489
Msp20I TGGCCA 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 560
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 4 cut(s) 217, 499, 566, 738
NdeII GATC 2 cut(s) 410, 735
NlaIII CATG 5 cut(s) 111, 310, 319, 349, 618
NlaIV GGNNCC 1 cut(s) 661
NspI RCATGY 3 cut(s) 310, 349, 618
PaeI GCATGC 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 97
PciI ACATGT 2 cut(s) 306, 614
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 367, 554
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 2 cut(s) 76, 533
PpsI GAGTC 2 cut(s) 76, 533
PscI ACATGT 2 cut(s) 306, 614
Psp1406I AACGTT 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 599
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 2 cut(s) 500, 646
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 2 cut(s) 240, 640
RsaNI GTAC 2 cut(s) 239, 639
SaqAI TTAA 4 cut(s) 186, 234, 390, 489
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 2 cut(s) 410, 735
Sau96I GGNCC 2 cut(s) 500, 646
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 2 cut(s) 77, 533
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 2 cut(s) 458, 517
Sfr274I CTCGAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 646
SlaI CTCGAG 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 59, 97
SmoI CTYRAG 2 cut(s) 59, 97
SphI GCATGC 1 cut(s) 349
Sse9I AATT 2 cut(s) 231, 371
SsiI CCGC 4 cut(s) 78, 218, 453, 739
SspMI CTAG 1 cut(s) 168
TaaI ACNGT 4 cut(s) 289, 325, 643, 762
TaiI ACGT 2 cut(s) 96, 333
TaqI TCGA 3 cut(s) 98, 160, 195
TasI AATT 2 cut(s) 231, 371
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 2 cut(s) 367, 554
Tru1I TTAA 4 cut(s) 186, 234, 390, 489
Tru9I TTAA 4 cut(s) 186, 234, 390, 489
TscAI CASTG 1 cut(s) 347
TseI GCWGC 1 cut(s) 580
TspDTI ATGAA 2 cut(s) 242, 698
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 646
XceI RCATGY 3 cut(s) 310, 349, 618
XhoI CTCGAG 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.