pycom03g09960

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0003912
Physical Location & Seq
Forward (+)
8748964 .. 8749386
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09960.1

Sequence Viewer

Length: 423 bp
ATGTTCAGACATGCGCCCCAAAAGCGGTTCACCAGTTCAATTGTGAAGTTATCTTCTCCTCTTGGATCTGTGAAGAACATCTCAAAGTCCTTTGGCTTGAAAGCATCCTCCAACTCCCGGGCATCAATGGAAGTATACAAGGTTAAATTGATTGGACCAGATGGCGTGGAGAACGAATTTGAGGCGGCGGATGATTGTTACATCTTAGATGCAGCTGAGAATGCTGGAGTTGAGCTGCCATATTCTTGCAGGGCTGGGGCATGCTCTACCTGTGCGGGGAAGCTGGCGTCAGGTTCAGTGGATCAGTCCGATGGTTCATTCCTCGACGACAATCAAATGAAGGAGGGTTATGTGCTGACTTGTGTCTCGTACCCGACTTCAGACCTTGTGATTCACACTCACAAGGAAAGTGAGCTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Fer2

Protein Analysis

141

Amino Acids

15.07

Weight (kDa)

5.32

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 53 - 126 5.1e-23 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 4 cut(s) 25, 185, 188, 275
AclWI GGATC 2 cut(s) 73, 309
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 24, 117, 276
AgsI TTSAA 2 cut(s) 39, 100
AluBI AGCT 4 cut(s) 215, 235, 283, 415
AluI AGCT 4 cut(s) 215, 235, 283, 415
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 2 cut(s) 73, 309
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 2 cut(s) 212, 235
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 2 cut(s) 118, 119
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 222, 224
BccI CCATC 2 cut(s) 155, 305
BcnI CCSGG 2 cut(s) 118, 119
BcoDI GTCTC 1 cut(s) 370
BisI GCNGC 3 cut(s) 186, 213, 236
BlsI GCNGC 3 cut(s) 187, 214, 237
Bme1390I CCNGG 2 cut(s) 118, 119
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 2 cut(s) 118, 119
BmsI GCATC 3 cut(s) 113, 131, 199
BoxI GACNNNNGTC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 246
BpuMI CCSGG 2 cut(s) 118, 119
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 117, 276
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 104, 196
BseLI CCNNNNNNNGG 3 cut(s) 24, 117, 276
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 222, 224
BseYI CCCAGC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 24, 117, 276
BsmAI GTCTC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 117
Bsp143I GATC 2 cut(s) 65, 301
BspACI CCGC 4 cut(s) 25, 185, 188, 275
BspCNI CTCAG 1 cut(s) 208
BspPI GGATC 2 cut(s) 73, 309
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 65, 301
BssNAI GTATAC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 262, 285
BstDEI CTNAG 2 cut(s) 205, 216
BstF5I GGATG 2 cut(s) 104, 196
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 68, 304
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 65, 301
BstMWI GCNNNNNNNGC 2 cut(s) 22, 221
BstNSI RCATGY 2 cut(s) 14, 264
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 116, 117
BstV1I GCAGC 2 cut(s) 222, 224
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 104, 196
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 262, 285
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 155
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 11, 261
CviJI RGCY 6 cut(s) 96, 215, 235, 254, 283, 415
CviKI_1 RGCY 6 cut(s) 96, 215, 235, 254, 283, 415
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 205, 216
DpnI GATC 2 cut(s) 67, 303
DpnII GATC 2 cut(s) 65, 301
EciI GGCGGA 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 117
FaeI CATG 2 cut(s) 14, 264
FaiI YATR 5 cut(s) 12, 136, 241, 262, 351
FatI CATG 2 cut(s) 10, 260
FauI CCCGC 1 cut(s) 268
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 186, 213, 236
FokI GGATG 2 cut(s) 91, 203
Fsp4HI GCNGC 3 cut(s) 186, 213, 236
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 186, 213, 236
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 246
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 276
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 14, 264
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 30, 136
Hpy188I TCNGA 3 cut(s) 8, 310, 382
Hpy8I GTNNAC 2 cut(s) 30, 136
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 212, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 221
HpyF3I CTNAG 2 cut(s) 205, 216
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 14, 264
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 65, 301
LpnPI CCDG 9 cut(s) 46, 131, 171, 210, 235, 240, 269, 276, 283
Lsp1109I GCAGC 2 cut(s) 222, 224
LweI GCATC 3 cut(s) 113, 131, 199
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 67, 303
MboI GATC 2 cut(s) 65, 301
MboII GAAGA 2 cut(s) 45, 85
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 65
MluCI AATT 3 cut(s) 39, 146, 176
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 69, 118, 175, 332, 337
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 118, 119
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 22, 221
NciI CCSGG 2 cut(s) 118, 119
NdeII GATC 2 cut(s) 65, 301
NlaIII CATG 2 cut(s) 14, 264
NspI RCATGY 2 cut(s) 14, 264
PaeI GCATGC 1 cut(s) 264
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 3 cut(s) 187, 214, 237
PshAI GACNNNNGTC 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 3 cut(s) 186, 213, 236
Sau3AI GATC 2 cut(s) 65, 301
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 118, 119
SetI ASST 8 cut(s) 144, 217, 237, 272, 285, 295, 387, 417
SfaNI GCATC 3 cut(s) 113, 131, 199
SinI GGWCC 1 cut(s) 155
SmaI CCCGGG 1 cut(s) 119
SphI GCATGC 1 cut(s) 264
Sse9I AATT 3 cut(s) 39, 146, 176
SsiI CCGC 4 cut(s) 25, 185, 188, 275
StyD4I CCNGG 2 cut(s) 116, 117
TaqI TCGA 1 cut(s) 324
TasI AATT 3 cut(s) 39, 146, 176
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 303
TseI GCWGC 2 cut(s) 212, 235
TspDTI ATGAA 2 cut(s) 306, 353
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 176
XceI RCATGY 2 cut(s) 14, 264
XmaI CCCGGG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.