AT2G28085

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004998
Physical Location & Seq
Reverse (-)
11967942 .. 11968712
771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28085.1

Sequence Viewer

Length: 375 bp
ATGACGAGGCAAAGAATGATTACAATTGAGTCGCCGAAGAAGAAAATGGGTGGAATTGTGAAGCTCAAGAATGTTGTAGAGAGGCTGGTGCAAATCAAAGGCTTTTCCTCGGCCAAGAAACCGTGTCCTGAAGAATACGGCCGAGATTGTGTCCCAAAAGACGTAAAGGAAGGTCACTTCGCGGTGATAGCTGTTGATGGGTATCATGAGCCTACACAAAGATTTGTTGTCCCATTGATGTTTCTAGAACACCCTATGTTCCGTAAGCTTCTAGAACAAGCAGAGGAGGAATACGGGTTCTATCACGATGGAGCGCTAATGGTACCTTGCCGGCCAAGCCACCTACGGATGATATTGACCGAGCAATGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

14.41

Weight (kDa)

8.69

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 38 - 119 1.3e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 3 cut(s) 111, 139, 332
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 324
AfeI AGCGCT 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 366
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 3 cut(s) 64, 191, 268
AluI AGCT 3 cut(s) 64, 191, 268
Aor51HI AGCGCT 1 cut(s) 315
AoxI GGCC 3 cut(s) 111, 139, 332
Asp718I GGTACC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 196
BanI GGYRCC 1 cut(s) 322
BccI CCATC 2 cut(s) 191, 302
BceAI ACGGC 1 cut(s) 154
BfaI CTAG 2 cut(s) 245, 272
BfoI RGCGCY 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 371
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 113, 141, 334
BshNI GGYRCC 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 2 cut(s) 137, 215
BslI CCNNNNNNNGG 1 cut(s) 366
BsmFI GGGAC 2 cut(s) 137, 215
BsnI GGCC 3 cut(s) 113, 141, 334
BspACI CCGC 1 cut(s) 182
BspANI GGCC 3 cut(s) 113, 141, 334
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 332
BstF5I GGATG 1 cut(s) 354
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 188, 336
BstUI CGCG 1 cut(s) 182
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 3 cut(s) 113, 141, 334
BtsCI GGATG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 330
Csp6I GTAC 1 cut(s) 323
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 323
EaeI YGGCCR 3 cut(s) 111, 139, 332
EagI CGGCCG 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 207, 257
FaqI GGGAC 2 cut(s) 137, 215
FatI CATG 1 cut(s) 205
FokI GGATG 1 cut(s) 361
FspBI CTAG 2 cut(s) 245, 272
GlaI GCGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 3 cut(s) 113, 141, 334
HapII CCGG 1 cut(s) 331
HhaI GCGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 196
Hpy188III TCNNGA 6 cut(s) 67, 128, 206, 245, 272, 305
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 336
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 314
KpnI GGTACC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 3 cut(s) 71, 141, 344
MaeI CTAG 2 cut(s) 245, 272
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 3 cut(s) 49, 52, 143
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 54
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 4 cut(s) 75, 118, 277, 280
MroNI GCCGGC 1 cut(s) 330
MspI CCGG 1 cut(s) 331
MunI CAATTG 1 cut(s) 24
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 188, 336
NaeI GCCGGC 1 cut(s) 332
NgoMIV GCCGGC 1 cut(s) 330
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 2 cut(s) 89, 167
NmuCI GTSAC 1 cut(s) 173
PagI TCATGA 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 324
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SchI GAGTC 1 cut(s) 38
SetI ASST 7 cut(s) 66, 165, 175, 193, 270, 328, 345
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 24, 54
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 245, 272
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 1 cut(s) 165
TaqII GACCGA 1 cut(s) 374
TasI AATT 2 cut(s) 24, 54
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 251, 361
XbaI TCTAGA 2 cut(s) 244, 271
XspI CTAG 2 cut(s) 245, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.