FvH4_3g31140

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004998
Physical Location & Seq
Reverse (-)
24973982 .. 24975623
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31140.t1

Sequence Viewer

Length: 624 bp
ATGGCCAAGTCTAGAACTAGTACCAAGAAGAACAACAGCATTATCAAGCTCAAGTTTGTCGTAGAAAAGATACAGAAGAGTCTAATGTTGGGTTTAAAGTTGAACTCTGATTGTAGTGATGATTCAACATATGTGCCAGGAGATGTCAAGGAAGGCCACTTTGCTGTGGTTGCTGTTTACGGCAGCGAAGTCAAGAGATTTGTGGTGGCGTTGGATTATTTGACGCATCCCAGATTCTTGGAGCTGCTGGAGCAAGCAGCGGAGGAGTATGGTTTTGATCGTGAGGGTGCCCTAACGATTCCTTGCCCGCCAAGCGAACTCGAGAAGATATTAGATCGTGATCAGCAATGGCAACAGAGGGAGAACTGCATCACTACAAATGAGGTTACTGGTACACTAGCAAGCAGAATGCTTGGAAGAACAATCCATGAGTTTCGAGCATCAAGCATTATGACAAGGGCAGAAGAAAATGTGATCATCATGGCAGCAATGGAGAAAAAGAGGGTAAAAAGACCTATCATCATCTTTGTAGGCAATAATTTGAGGAAATCATCTTCTGCATATCCGGAAGTGAGGAGTCCCAAAAAGGTAATTACTGAAGTTATGGAAGAGATCGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

208

Amino Acids

23.51

Weight (kDa)

7.68

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 34 - 111 2.8e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 2 cut(s) 260, 308
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 22, 394
AgsI TTSAA 2 cut(s) 103, 126
AhlI ACTAGT 1 cut(s) 17
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 49, 244
AluI AGCT 2 cut(s) 49, 244
Ama87I CYCGRG 1 cut(s) 320
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 2 cut(s) 3, 154
ApeKI GCWGC 4 cut(s) 183, 244, 257, 485
AvaI CYCGRG 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 195, 231, 269, 497
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 138
BclI TGATCA 2 cut(s) 340, 474
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 12, 18, 398
BisI GCNGC 4 cut(s) 184, 245, 258, 486
BlsI GCNGC 4 cut(s) 185, 246, 259, 487
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 235, 378, 449
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 565
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 2 cut(s) 353, 495
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 339
BseMI GCAATG 2 cut(s) 353, 495
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 278, 589
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 4 cut(s) 195, 231, 269, 497
BshFI GGCC 2 cut(s) 5, 156
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 2 cut(s) 5, 156
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 5 cut(s) 277, 334, 340, 474, 612
BspACI CCGC 2 cut(s) 260, 308
BspANI GGCC 2 cut(s) 5, 156
BspEI TCCGGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 353, 495
BsrI ACTGG 1 cut(s) 394
BssMI GATC 5 cut(s) 277, 334, 340, 474, 612
Bst2UI CCWGG 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 71, 603, 612
BstC8I GCNNGC 3 cut(s) 255, 308, 403
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 5 cut(s) 280, 337, 343, 477, 615
BstMBI GATC 5 cut(s) 277, 334, 340, 474, 612
BstMWI GCNNNNNNNGC 3 cut(s) 170, 250, 312
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 195, 231, 269, 497
BstXI CCANNNNNNTGG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 5, 156
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 255, 308, 403
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 21, 393
CviAII CATG 2 cut(s) 428, 481
CviJI RGCY 4 cut(s) 5, 49, 156, 244
CviKI_1 RGCY 4 cut(s) 5, 49, 156, 244
CviQI GTAC 2 cut(s) 21, 393
DpnI GATC 5 cut(s) 279, 336, 342, 476, 614
DpnII GATC 5 cut(s) 277, 334, 340, 474, 612
DraI TTTAAA 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 71, 603, 612
EarI CTCTTC 3 cut(s) 71, 603, 612
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 431, 484
FaiI YATR 8 cut(s) 130, 132, 270, 429, 452, 482, 562, 605
FaqI GGGAC 1 cut(s) 564
FatI CATG 2 cut(s) 427, 480
FauI CCCGC 1 cut(s) 315
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 2 cut(s) 340, 474
Fnu4HI GCNGC 4 cut(s) 184, 245, 258, 486
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 4 cut(s) 184, 245, 258, 486
FspBI CTAG 3 cut(s) 12, 18, 398
GluI GCNGC 4 cut(s) 184, 245, 258, 486
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 5, 156
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 431, 484
HinfI GANTC 5 cut(s) 79, 122, 234, 298, 577
HpaII CCGG 1 cut(s) 566
Hpy166II GTNNAC 2 cut(s) 178, 395
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 6 cut(s) 12, 193, 281, 322, 338, 566
Hpy8I GTNNAC 2 cut(s) 178, 395
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 369, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 250, 312
Hsp92II CATG 2 cut(s) 431, 484
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 340, 474
Kzo9I GATC 5 cut(s) 277, 334, 340, 474, 612
LmnI GCTCC 2 cut(s) 241, 250
LpnPI CCDG 6 cut(s) 123, 150, 233, 244, 375, 579
Lsp1109I GCAGC 4 cut(s) 195, 231, 269, 497
LweI GCATC 3 cut(s) 235, 378, 449
MaeI CTAG 3 cut(s) 12, 18, 398
MaeIII GTNAC 1 cut(s) 385
MalI GATC 5 cut(s) 279, 336, 342, 476, 614
MboI GATC 5 cut(s) 277, 334, 340, 474, 612
MboII GAAGA 7 cut(s) 40, 88, 337, 429, 476, 546, 620
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 538, 591
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 88, 586
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 256, 277, 351, 376, 495, 537, 567
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 565
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 170, 250, 312
NdeI CATATG 1 cut(s) 130
NdeII GATC 5 cut(s) 277, 334, 340, 474, 612
NlaIII CATG 2 cut(s) 431, 484
NlaIV GGNNCC 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 320
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 122, 234, 298
PkrI GCNGC 4 cut(s) 185, 246, 259, 487
PleI GAGTC 2 cut(s) 87, 585
PpsI GAGTC 2 cut(s) 87, 585
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 22, 394
RsaNI GTAC 2 cut(s) 21, 393
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 4 cut(s) 184, 245, 258, 486
Sau3AI GATC 5 cut(s) 277, 334, 340, 474, 612
SchI GAGTC 2 cut(s) 88, 586
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 51, 246, 387, 517, 591
SfaNI GCATC 3 cut(s) 235, 378, 449
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 50, 320
SmoI CTYRAG 2 cut(s) 50, 320
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 2 cut(s) 538, 591
SsiI CCGC 2 cut(s) 260, 308
SspMI CTAG 3 cut(s) 12, 18, 398
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 3 cut(s) 321, 436, 615
TasI AATT 2 cut(s) 538, 591
TfiI GAWTC 3 cut(s) 122, 234, 298
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 4 cut(s) 183, 244, 257, 485
XbaI TCTAGA 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 12, 18, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.