Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021332.1

Orthogroup ID

OG0004998

Physical Location & Seq

Genomic Coordinates Forward (+)

55833 .. 56192

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021332.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggtaaggctaggagtagcagtgggaagaataagaacactagcattcccaagctcaaggttttagtagaaaagctgcaatggatcctatccttgggtccattgaaatcgaattattcgacatcagaggctgcgaacgttgagcaaggtcactttgtagtaatggctgtacacggggaagaagagaagcgatttgtggtgccgttgagctatttgacacacccaaatttctttaagctgttggagcaggcagctgaggagtatggttttaattacaagggtgcattaacggttccttgccatccaagcgagctcgagaagattctaaataatgagcagtggccggaagaattgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

6.91

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28085
fragaria_vesca	FvH4_3g31140 FvH4_3g31150
malus_domestica	MD00G1033700.v1.1 MD11G1145300.v1.1
prunus_persica	Prupe.6G108300_v2.0.a1 Prupe.6G108400_v2.0.a1 Prupe.6G108500_v2.0.a1
pyrus_communis	pycom11g11850
rosa_chinensis	RchiOBHm_Chr5g0057771 RchiOBHm_Chr5g0057781
rosa_laevigata	RLG00000035175 RLG00000035176 RLG00000035177
rosa_multiflora	Rmu_co8343889.1_g000001 Rmu_sc0010475.1_g000016 Rmu_sc0011347.1_g000001 Rmu_sc0021332.1_g000010
rosa_roxburghii	Rroxscaffold_1G00022710
rosa_rugosa	Rorug05G0309100 Rorug05G0309200 Rorug05G0309400
rosa_samantha	Rh5AG377300 Rh5BG388900 Rh5CG413200 Rh5CG413300 Rh5DG403300 Rh5DG403800
rosa_wichuraiana	Rw5G035620 Rw5G035640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	2 cut(s)	79, 92
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	106, 355
AluBI	AGCT	6 cut(s)	55, 76, 210, 238, 254, 313
AluI	AGCT	6 cut(s)	55, 76, 210, 238, 254, 313
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	79, 92
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	76, 131, 251
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	63, 118, 263
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	12, 42
BisI	GCNGC	3 cut(s)	77, 132, 252
BlsI	GCNGC	3 cut(s)	78, 133, 253
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	86, 99, 201, 294
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	3 cut(s)	63, 118, 263
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	4 cut(s)	86, 99, 201, 294
BspPI	GGATC	2 cut(s)	79, 92
BspT107I	GGYRCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	249, 311
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 306
BstV1I	GCAGC	3 cut(s)	63, 118, 263
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	2 cut(s)	28, 344
BtsIMutI	CAGTG	2 cut(s)	28, 344
Cac8I	GCNNGC	2 cut(s)	249, 311
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	170
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	93
FaiI	YATR	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	77, 132, 252
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	77, 132, 252
FspBI	CTAG	2 cut(s)	12, 42
GluI	GCNGC	3 cut(s)	77, 132, 252
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	344
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	79, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 306
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	63, 118, 263
MaeI	CTAG	2 cut(s)	12, 42
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	5 cut(s)	40, 191, 194, 331, 359
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	4 cut(s)	112, 226, 271, 350
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	121, 250
MseI	TTAA	3 cut(s)	234, 270, 287
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	244, 306
NdeII	GATC	1 cut(s)	84
NlaIV	GGNNCC	4 cut(s)	86, 99, 201, 294
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	78, 133, 253
Psp124BI	GAGCTC	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	138
PspN4I	GGNNCC	4 cut(s)	86, 99, 201, 294
PspPI	GGNCC	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	234, 270, 287
SatI	GCNGC	3 cut(s)	77, 132, 252
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	9 cut(s)	57, 63, 78, 141, 151, 212, 240, 256, 315
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	56, 314
SmoI	CTYRAG	2 cut(s)	56, 314
Sse9I	AATT	4 cut(s)	112, 226, 271, 350
SspMI	CTAG	2 cut(s)	12, 42
SstI	GAGCTC	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	110, 119, 315
TasI	AATT	4 cut(s)	112, 226, 271, 350
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	234, 270, 287
Tru9I	TTAA	3 cut(s)	234, 270, 287
TscAI	CASTG	2 cut(s)	28, 344
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	76, 131, 251
Tsp45I	GTSAC	1 cut(s)	149
TspRI	CASTG	2 cut(s)	28, 344
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	2 cut(s)	12, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.