Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011347.1

Orthogroup ID

OG0004998

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 361

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011347.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggccaagtctagaagtatcagtggcaagaagaagaacagcatagtgaagctcaaggttgtagtagaaaagctgcagcggagtctattgttgagccggaaatccaattcaagttttgaagacgactctacctcagtgcccgaagacgttaaggaaggtcactttgcggtgattgccgtggacggggacaaacagaagagattcgtggtgccgttaagttatctggctcacccaactttcttgaagctgctggagcaagcggccgaggagtacggttttgatcacgagggtgccctagcgattccttgcctgccaagcgagcttgagaagatattaagtgatgagcagtggcagaagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

120

Amino Acids

13.46

Weight (kDa)

7.83

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28085
fragaria_vesca	FvH4_3g31140 FvH4_3g31150
malus_domestica	MD00G1033700.v1.1 MD11G1145300.v1.1
prunus_persica	Prupe.6G108300_v2.0.a1 Prupe.6G108400_v2.0.a1 Prupe.6G108500_v2.0.a1
pyrus_communis	pycom11g11850
rosa_chinensis	RchiOBHm_Chr5g0057771 RchiOBHm_Chr5g0057781
rosa_laevigata	RLG00000035175 RLG00000035176 RLG00000035177
rosa_multiflora	Rmu_co8343889.1_g000001 Rmu_sc0010475.1_g000016 Rmu_sc0011347.1_g000001 Rmu_sc0021332.1_g000010
rosa_roxburghii	Rroxscaffold_1G00022710
rosa_rugosa	Rorug05G0309100 Rorug05G0309200 Rorug05G0309400
rosa_samantha	Rh5AG377300 Rh5BG388900 Rh5CG413200 Rh5CG413300 Rh5DG403300 Rh5DG403800
rosa_wichuraiana	Rw5G035620 Rw5G035640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 290
AciI	CCGC	3 cut(s)	79, 167, 260
AcoI	YGGCCR	2 cut(s)	3, 261
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	111, 119, 244
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	52, 73, 247, 322
AluI	AGCT	4 cut(s)	52, 73, 247, 322
AoxI	GGCC	2 cut(s)	3, 261
ApeKI	GCWGC	3 cut(s)	73, 76, 247
Asp700I	GAANNNNTTC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	181, 221
BaeGI	GKGCMC	2 cut(s)	141, 295
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	208, 290
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	126, 150
BbvI	GCAGC	3 cut(s)	60, 88, 234
BceAI	ACGGC	2 cut(s)	161, 196
BclI	TGATCA	1 cut(s)	280
BfaI	CTAG	2 cut(s)	12, 296
BfmI	CTRYAG	1 cut(s)	74
BisI	GCNGC	4 cut(s)	74, 77, 248, 261
BlsI	GCNGC	4 cut(s)	75, 78, 249, 262
BmiI	GGNNCC	2 cut(s)	210, 292
BpiI	GAAGAC	2 cut(s)	126, 150
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	2 cut(s)	38, 344
BsaJI	CCNNGG	2 cut(s)	177, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	177, 264
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	2 cut(s)	141, 295
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	60, 88, 234
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	5, 263
BshNI	GGYRCC	2 cut(s)	208, 290
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	5, 263
Bsp1286I	GDGCHC	2 cut(s)	141, 295
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	79, 167, 260
BspANI	GGCC	2 cut(s)	5, 263
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	210, 292
BspMAI	CTGCAG	1 cut(s)	78
BspT107I	GGYRCC	2 cut(s)	208, 290
BssECI	CCNNGG	2 cut(s)	177, 264
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	258, 311, 320
BstDEI	CTNAG	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 253, 315, 319
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	2 cut(s)	141, 295
BstV1I	GCAGC	3 cut(s)	60, 88, 234
BstV2I	GAAGAC	2 cut(s)	126, 150
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	5, 263
BtgI	CCRYGG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	28, 141, 353
Cac8I	GCNNGC	3 cut(s)	258, 311, 320
Csp6I	GTAC	1 cut(s)	271
CviJI	RGCY	8 cut(s)	5, 52, 73, 96, 227, 247, 263, 322
CviKI_1	RGCY	8 cut(s)	5, 52, 73, 96, 227, 247, 263, 322
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	2 cut(s)	3, 261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	261
FaiI	YATR	1 cut(s)	44
FaqI	GGGAC	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	74, 77, 248, 261
Fsp4HI	GCNGC	4 cut(s)	74, 77, 248, 261
FspBI	CTAG	2 cut(s)	12, 296
GluI	GCNGC	4 cut(s)	74, 77, 248, 261
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	5, 263
HapII	CCGG	1 cut(s)	97
HinfI	GANTC	4 cut(s)	82, 125, 201, 301
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	181, 221
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	3 cut(s)	12, 241, 284
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 253, 315, 319
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	110, 209, 236, 323
Lsp1109I	GCAGC	3 cut(s)	60, 88, 234
MaeI	CTAG	2 cut(s)	12, 296
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	6 cut(s)	43, 46, 131, 155, 208, 340
MhlI	GDGCHC	2 cut(s)	141, 295
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	91, 119
MnlI	CCTC	3 cut(s)	142, 259, 280
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	150, 215, 335
MslI	CAYNNNNRTG	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	173, 253, 315, 319
NdeII	GATC	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	210, 292
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	201, 301
PkrI	GCNGC	4 cut(s)	75, 78, 249, 262
PleI	GAGTC	2 cut(s)	90, 119
PpsI	GAGTC	2 cut(s)	90, 119
PspN4I	GGNNCC	2 cut(s)	210, 292
PstI	CTGCAG	1 cut(s)	78
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	150, 215, 335
SatI	GCNGC	4 cut(s)	74, 77, 248, 261
Sau3AI	GATC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	91, 119
SduI	GDGCHC	2 cut(s)	141, 295
SetI	ASST	8 cut(s)	54, 60, 75, 134, 150, 160, 249, 324
SfcI	CTRYAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	2 cut(s)	53, 323
SmoI	CTYRAG	2 cut(s)	53, 323
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	79, 167, 260
SspMI	CTAG	2 cut(s)	12, 296
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	150
TasI	AATT	1 cut(s)	106
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	201, 301
Tru1I	TTAA	3 cut(s)	150, 215, 335
Tru9I	TTAA	3 cut(s)	150, 215, 335
TscAI	CASTG	3 cut(s)	28, 141, 353
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	73, 76, 247
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	3 cut(s)	28, 141, 353
XbaI	TCTAGA	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	12, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.