Rorug05G0309400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004998
Physical Location & Seq
Forward (+)
36192830 .. 36193672
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0309400.1

Sequence Viewer

Length: 843 bp
ATGCGGAGATGGCAAGAGTGGTCATATGTTGGAGACAACAAAGAAGGGGGTGCTTTTCCTAGTCTCTCTAGGCTTCATCTGGAGGATTGTCCTAAGCTAACTGGAATATTACCATTAGATTGCTTCTCCATGCTACAATCACTCACAGTCTTGAATGCCAATATAGAATGTATTACGATGTCACAAGGATCAAAATGCCCTGAACTGAGTAAACTGAAAATGTATGATTGCTGGAATTTTGGTTGTTTTCCCGAGGGAGGGCTGCATGCTCCCAATTTGACCGTTATAGATATCGATGGATGTAGAAATTTGAGGTCACTGCCAGAGCATATGAACACCCTTCTTCCATCTCTCGAGTCTATTTCCATAGGACTTTGTCCAGAACTGGAATCATTTCCAGGTGGGGGATTGCCGTCAAATTTGAAGTCACTGAATATCCGTTCCTGCAAAAAACTCATTGCAAACCGAATGCAATGGGGACTACAGGAACTCACCTCTCTCGAAGTCTTGACAATTGACTTCATCAGATGTGAAGAACTAGATTCATTTCCAGAGGAGGGGCTGATGCCAGCCTCTCTTACCTCTCTCTCCATCTACGATCTTTTGAATATGAAGACCATTGAGGGCAAGGAGTTGAGACACCTCATCTCGCTTACAAGATTGGGAATAATGGGTTGCCCTGAGCTCCAGTGCTTACCAGATGAAGGGCTACCGGCTTCTCTTTCTTATCCAAGAATTGAGAGATGTCCTTTGCTACAACAAAGATGCCACAGAGACCAAGGGGAAGATTGGCCCAAGATTGCTCACATCTCCAACATATGGATTGATGGAAAACCGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

280

Amino Acids

31.43

Weight (kDa)

5.23

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 819
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 3 cut(s) 235, 307, 418
AfiI CCNNNNNNNGG 6 cut(s) 257, 258, 404, 557, 704, 819
AgsI TTSAA 3 cut(s) 154, 424, 607
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 97, 685
AluI AGCT 2 cut(s) 97, 685
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 4 cut(s) 27, 68, 631, 768
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 2 cut(s) 251, 353
AoxI GGCC 1 cut(s) 791
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 3 cut(s) 235, 307, 418
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 792
AsuHPI GGTGA 1 cut(s) 484
AvaI CYCGRG 2 cut(s) 251, 353
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 249
BccI CCATC 5 cut(s) 3, 290, 355, 599, 821
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 4 cut(s) 27, 68, 631, 768
BfaI CTAG 3 cut(s) 60, 69, 539
BfmI CTRYAG 1 cut(s) 482
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 399
BmeT110I CYCGRG 2 cut(s) 251, 353
BmgT120I GGNCC 1 cut(s) 792
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 555, 755
BpiI GAAGAC 1 cut(s) 620
BpmI CTGGAG 2 cut(s) 101, 671
Bpu10I CCTNAGC 2 cut(s) 93, 681
Bsa29I ATCGAT 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 2 cut(s) 252, 778
Bsc4I CCNNNNNNNGG 6 cut(s) 257, 258, 404, 557, 704, 819
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 3 cut(s) 106, 390, 688
Bse3DI GCAATG 2 cut(s) 456, 479
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 252, 778
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 6 cut(s) 257, 258, 404, 557, 704, 819
BseMI GCAATG 2 cut(s) 456, 479
BseMII CTCAG 2 cut(s) 197, 672
BseNI ACTGG 3 cut(s) 106, 390, 688
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 2 cut(s) 251, 353
BsiSI CCGG 1 cut(s) 713
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 6 cut(s) 257, 258, 404, 557, 704, 819
BsmAI GTCTC 4 cut(s) 27, 68, 631, 768
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 2 cut(s) 160, 474
BsnI GGCC 1 cut(s) 793
Bso31I GGTCTC 1 cut(s) 768
BsoBI CYCGRG 2 cut(s) 251, 353
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 2 cut(s) 188, 598
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 793
BspCNI CTCAG 2 cut(s) 198, 673
BspDI ATCGAT 1 cut(s) 294
BspPI GGATC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 768
BsrDI GCAATG 2 cut(s) 456, 479
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 3 cut(s) 106, 390, 688
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 252, 778
BssMI GATC 2 cut(s) 188, 598
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 148, 283
BstC8I GCNNGC 2 cut(s) 267, 570
BstDEI CTNAG 3 cut(s) 93, 206, 681
BstF5I GGATG 1 cut(s) 305
BstKTI GATC 2 cut(s) 191, 601
BstMAI GTCTC 4 cut(s) 27, 68, 631, 768
BstMBI GATC 2 cut(s) 188, 598
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 620
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 793
BsuTUI ATCGAT 1 cut(s) 294
BtsCI GGATG 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 3 cut(s) 317, 428, 695
Cac8I GCNNGC 2 cut(s) 267, 570
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 1 cut(s) 792
ClaI ATCGAT 1 cut(s) 294
CviAII CATG 2 cut(s) 130, 266
CviJI RGCY 9 cut(s) 73, 97, 262, 562, 572, 685, 709, 716, 793
CviKI_1 RGCY 9 cut(s) 73, 97, 262, 562, 572, 685, 709, 716, 793
DdeI CTNAG 3 cut(s) 93, 206, 681
DpnI GATC 2 cut(s) 190, 600
DpnII GATC 2 cut(s) 188, 598
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 768
Eco32I GATATC 1 cut(s) 292
Eco53kI GAGCTC 1 cut(s) 685
Eco88I CYCGRG 2 cut(s) 251, 353
EcoICRI GAGCTC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 2 cut(s) 133, 269
FaqI GGGAC 1 cut(s) 492
FatI CATG 2 cut(s) 129, 265
FauNDI CATATG 3 cut(s) 25, 330, 818
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 3 cut(s) 60, 69, 539
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 2 cut(s) 101, 671
HaeIII GGCC 1 cut(s) 793
HapII CCGG 1 cut(s) 713
Hin1II CATG 2 cut(s) 133, 269
HinfI GANTC 3 cut(s) 356, 389, 542
HpaII CCGG 1 cut(s) 713
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 527
Hpy188III TCNNGA 8 cut(s) 80, 151, 251, 353, 380, 500, 508, 551
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 38, 350, 698
HpyCH4III ACNGT 2 cut(s) 148, 283
HpyCH4V TGCA 4 cut(s) 265, 447, 461, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 3 cut(s) 93, 206, 681
Hsp92II CATG 2 cut(s) 133, 269
Kzo9I GATC 2 cut(s) 188, 598
LmnI GCTCC 2 cut(s) 274, 690
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 2 cut(s) 555, 755
MaeI CTAG 3 cut(s) 60, 69, 539
MaeIII GTNAC 3 cut(s) 180, 315, 426
MalI GATC 2 cut(s) 190, 600
MboI GATC 2 cut(s) 188, 598
MboII GAAGA 4 cut(s) 335, 545, 625, 797
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 6 cut(s) 235, 274, 307, 418, 513, 735
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 10, 837
MroXI GAANNNNTTC 1 cut(s) 393
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 513
Mva1269I GAATGC 2 cut(s) 160, 474
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 3 cut(s) 25, 330, 818
NdeII GATC 2 cut(s) 188, 598
NlaIII CATG 2 cut(s) 133, 269
NmuCI GTSAC 3 cut(s) 180, 315, 426
NspI RCATGY 1 cut(s) 269
PaeI GCATGC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 353
PctI GAATGC 2 cut(s) 160, 474
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 389, 542
PflFI GACNNNGTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 819
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspPI GGNCC 1 cut(s) 792
PsyI GACNNNGTC 1 cut(s) 375
SacI GAGCTC 1 cut(s) 687
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 2 cut(s) 188, 598
Sau96I GGNCC 1 cut(s) 792
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 687
SetI ASST 7 cut(s) 99, 317, 403, 497, 584, 645, 687
SfaNI GCATC 2 cut(s) 555, 755
SfcI CTRYAG 1 cut(s) 482
Sfr274I CTCGAG 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 269
Sse9I AATT 6 cut(s) 235, 274, 307, 418, 513, 735
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 108
SspMI CTAG 3 cut(s) 60, 69, 539
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 2 cut(s) 148, 283
TaqI TCGA 3 cut(s) 294, 354, 501
TasI AATT 6 cut(s) 235, 274, 307, 418, 513, 735
TfiI GAWTC 2 cut(s) 389, 542
TscAI CASTG 3 cut(s) 324, 435, 695
TseFI GTSAC 3 cut(s) 180, 315, 426
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 3 cut(s) 180, 315, 426
TspDTI ATGAA 6 cut(s) 65, 347, 511, 534, 626, 717
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 324, 435, 695
Tth111I GACNNNGTC 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 819
XapI RAATTY 3 cut(s) 235, 307, 418
XceI RCATGY 1 cut(s) 269
XhoI CTCGAG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 3 cut(s) 60, 69, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.