Prupe.6G108500_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0004998
Physical Location & Seq
Forward (+)
7738492 .. 7739254
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G108500.1

Sequence Viewer

Length: 429 bp
ATGGAAAAGTCTAGAACTAGTAGTGCTTGCAAGAAGAAGAATAGCATTGTCAAGCTCAAAGTTGTAGTAGAAAAGCTACAAAGAAGTCTATATTTGGGAAGATCAAAACCATCAAATTATTCCGATGACTCAACACGTGTGCCGGAAGATGTGAAGGAGGGTCACTTTGCTGTGATAGCTGTGGATGGAGATGAACCAAAGAGATTTGTGGTGGCCTTGAGTTACTTAACACACCCAACTTTCTTGAAGCTATTGGAGCAAGCAGCTGAGGAGTATGGTTTTGATCATGAAGGCGCACTCACCATTCCTTGCCAGCCACGAGAGCTTGAGAAGATATTAGATGACGATCGGCAATGGCAGAAGGAAGAAAGAAGCTCCTCTAGTGATGGGAACTGGGGTTCTTGTAAAGCTATGGTGCAGAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

6.31

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 134, 136
AgsI TTSAA 1 cut(s) 247
AhlI ACTAGT 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 382, 414
AluBI AGCT 9 cut(s) 55, 76, 179, 250, 266, 325, 375, 410, 423
AluI AGCT 9 cut(s) 55, 76, 179, 250, 266, 325, 375, 410, 423
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 292
BauI CACGAG 1 cut(s) 318
BbrPI CACGTG 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 275
BccI CCATC 3 cut(s) 118, 179, 380
BclI TGATCA 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 3 cut(s) 12, 18, 381
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 403
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 238, 347
BsaAI YACGTR 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 345
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 345
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 284, 367
BseXI GCAGC 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 349
BsiSI CCGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 101, 283, 346
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 398
BssMI GATC 3 cut(s) 101, 283, 346
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 28, 261, 314
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 104, 286, 349
BstMBI GATC 3 cut(s) 101, 283, 346
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 176, 256, 322
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 28, 261, 314
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 296
CviAII CATG 1 cut(s) 287
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 103, 285, 348
DpnII GATC 3 cut(s) 101, 283, 346
Eco72I CACGTG 1 cut(s) 137
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 91, 276, 288, 413
FatI CATG 1 cut(s) 286
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 3 cut(s) 12, 18, 381
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 12, 244, 287
HpyAV CCTTC 3 cut(s) 148, 284, 355
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 30, 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 256, 322
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 3 cut(s) 101, 283, 346
LmnI GCTCC 2 cut(s) 256, 380
LpnPI CCDG 3 cut(s) 156, 326, 379
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 3 cut(s) 12, 18, 381
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 161, 221
MalI GATC 3 cut(s) 103, 285, 348
MboI GATC 3 cut(s) 101, 283, 346
MboII GAAGA 6 cut(s) 46, 49, 111, 158, 343, 377
MluCI AATT 1 cut(s) 115
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 3 cut(s) 151, 262, 388
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 176, 256, 322
NdeII GATC 3 cut(s) 101, 283, 346
NlaIII CATG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 265
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 1 cut(s) 122
PmaCI CACGTG 1 cut(s) 137
PmlI CACGTG 1 cut(s) 137
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 137
PspCI CACGTG 1 cut(s) 137
PvuI CGATCG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 101, 283, 346
SchI GAGTC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 217, 326
SmoI CTYRAG 2 cut(s) 217, 326
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 1 cut(s) 115
SspMI CTAG 3 cut(s) 12, 18, 381
TaiI ACGT 1 cut(s) 139
TasI AATT 1 cut(s) 115
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 207, 303
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 3 cut(s) 12, 18, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.