Rorug05G0309200

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004998
Physical Location & Seq
Forward (+)
36190286 .. 36190543
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0309200.1

Sequence Viewer

Length: 258 bp
ATGGCTCTGGAGGTCGTAGGTGGAGCTTTTCTCTCTGGTTTATTTCAGGAAATATTTCATAAGATGACCTCTCGGGAGGTCATGGACTTCATCAAGGGGAAGAAGCAGACCAAAGGGTTGCTGAACAGGTTGGAGATGACACTGCGATCTGTTAATGTTGTTCTGGATGATTCTGAAGAGAAGCAGTTAAGTAGCTCAGATGTGAAGGAGTGGCTGGATGAGCTAAAGAGGCAGTCTTCGGTGCTGAGGACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

6.57

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 77 6.9e-09 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 195
AluBI AGCT 3 cut(s) 26, 195, 223
AluI AGCT 3 cut(s) 26, 195, 223
Ama87I CYCGRG 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 245
BseGI GGATG 2 cut(s) 172, 223
BseMII CTCAG 2 cut(s) 210, 236
BsiHKCI CYCGRG 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 146
BspCNI CTCAG 2 cut(s) 209, 237
BssMI GATC 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 196, 245
BstF5I GGATG 2 cut(s) 172, 223
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 220, 229
BstV2I GAAGAC 1 cut(s) 228
BtsCI GGATG 2 cut(s) 172, 223
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 249
CviAII CATG 1 cut(s) 82
CviJI RGCY 5 cut(s) 5, 26, 195, 214, 223
CviKI_1 RGCY 5 cut(s) 5, 26, 195, 214, 223
DdeI CTNAG 2 cut(s) 196, 245
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 249
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 60, 83
FatI CATG 1 cut(s) 81
FokI GGATG 2 cut(s) 179, 230
GsuI CTGGAG 1 cut(s) 29
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 175, 199
Hpy188III TCNNGA 4 cut(s) 8, 47, 74, 164
HpyAV CCTTC 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 229
HpyF3I CTNAG 2 cut(s) 196, 245
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 21, 32, 112, 149, 200
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 3 cut(s) 112, 188, 228
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 4, 70, 79, 222, 240
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 2 cut(s) 153, 188
MwoI GCNNNNNNNGC 2 cut(s) 220, 229
NdeII GATC 1 cut(s) 146
NlaIII CATG 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
PspPI GGNCC 1 cut(s) 249
PspPPI RGGWCCY 1 cut(s) 249
SaqAI TTAA 2 cut(s) 153, 188
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 249
SetI ASST 9 cut(s) 15, 22, 28, 71, 81, 131, 197, 225, 254
SinI GGWCC 1 cut(s) 249
SspI AATATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 153, 188
Tru9I TTAA 2 cut(s) 153, 188
TscAI CASTG 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 47, 79
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.