Auxin responsive protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28085 |
| fragaria_vesca | FvH4_3g31140 FvH4_3g31150 |
| malus_domestica | MD00G1033700.v1.1 MD11G1145300.v1.1 |
| prunus_persica | Prupe.6G108300_v2.0.a1 Prupe.6G108400_v2.0.a1 Prupe.6G108500_v2.0.a1 |
| pyrus_communis | pycom11g11850 |
| rosa_chinensis | RchiOBHm_Chr5g0057771 RchiOBHm_Chr5g0057781 |
| rosa_laevigata | RLG00000035175 RLG00000035176 RLG00000035177 |
| rosa_multiflora | Rmu_co8343889.1_g000001 Rmu_sc0010475.1_g000016 Rmu_sc0011347.1_g000001 Rmu_sc0021332.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00022710 |
| rosa_rugosa | Rorug05G0309100 Rorug05G0309200 Rorug05G0309400 |
| rosa_samantha | Rh5AG377300 Rh5BG388900 Rh5CG413200 Rh5CG413300 Rh5DG403300 Rh5DG403800 |
| rosa_wichuraiana | Rw5G035620 Rw5G035640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 299 |
| AciI | CCGC | 1 cut(s) | 269 |
| AcsI | RAATTY | 1 cut(s) | 118 |
| AcuI | CTGAAG | 1 cut(s) | 272 |
| AfaI | GTAC | 1 cut(s) | 25 |
| AgsI | TTSAA | 1 cut(s) | 71 |
| AluBI | AGCT | 7 cut(s) | 55, 76, 185, 256, 331, 398, 411 |
| AluI | AGCT | 7 cut(s) | 55, 76, 185, 256, 331, 398, 411 |
| Alw21I | GWGCWC | 1 cut(s) | 333 |
| Ama87I | CYCGRG | 1 cut(s) | 332 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApeKI | GCWGC | 1 cut(s) | 411 |
| ApoI | RAATTY | 1 cut(s) | 118 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 88 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AvaI | CYCGRG | 1 cut(s) | 332 |
| BaeGI | GKGCMC | 1 cut(s) | 304 |
| BanI | GGYRCC | 1 cut(s) | 299 |
| BanII | GRGCYC | 1 cut(s) | 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 333 |
| BbvCI | CCTCAGC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 398 |
| BccI | CCATC | 2 cut(s) | 185, 368 |
| BfaI | CTAG | 2 cut(s) | 12, 369 |
| BisI | GCNGC | 2 cut(s) | 270, 412 |
| BlsI | GCNGC | 2 cut(s) | 271, 413 |
| BmcAI | AGTACT | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 1 cut(s) | 332 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 2 cut(s) | 301, 364 |
| BpmI | CTGGAG | 1 cut(s) | 403 |
| Bpu10I | CCTNAGC | 1 cut(s) | 273 |
| BsaBI | GATNNNNATC | 1 cut(s) | 106 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 376, 406 |
| Bse1I | ACTGG | 1 cut(s) | 386 |
| Bse8I | GATNNNNATC | 1 cut(s) | 106 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseJI | GATNNNNATC | 1 cut(s) | 106 |
| BseMII | CTCAG | 1 cut(s) | 264 |
| BseNI | ACTGG | 1 cut(s) | 386 |
| BseRI | GAGGAG | 2 cut(s) | 290, 355 |
| BseSI | GKGCMC | 1 cut(s) | 304 |
| BseXI | GCAGC | 1 cut(s) | 398 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BshNI | GGYRCC | 1 cut(s) | 299 |
| BsiHKAI | GWGCWC | 1 cut(s) | 333 |
| BsiHKCI | CYCGRG | 1 cut(s) | 332 |
| BsnI | GGCC | 1 cut(s) | 168 |
| BsoBI | CYCGRG | 1 cut(s) | 332 |
| Bsp1286I | GDGCHC | 2 cut(s) | 304, 333 |
| Bsp143I | GATC | 1 cut(s) | 101 |
| BspACI | CCGC | 1 cut(s) | 269 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspLI | GGNNCC | 2 cut(s) | 301, 364 |
| BspQI | GCTCTTC | 1 cut(s) | 35 |
| BspT107I | GGYRCC | 1 cut(s) | 299 |
| BsrI | ACTGG | 1 cut(s) | 386 |
| BssMI | GATC | 1 cut(s) | 101 |
| Bst6I | CTCTTC | 1 cut(s) | 35 |
| BstC8I | GCNNGC | 3 cut(s) | 267, 320, 329 |
| BstDEI | CTNAG | 2 cut(s) | 6, 273 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstKTI | GATC | 1 cut(s) | 104 |
| BstMBI | GATC | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 182, 262, 324, 328 |
| BstSLI | GKGCMC | 1 cut(s) | 304 |
| BstV1I | GCAGC | 1 cut(s) | 398 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| Cac8I | GCNNGC | 3 cut(s) | 267, 320, 329 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| Csp6I | GTAC | 1 cut(s) | 24 |
| CviAII | CATG | 1 cut(s) | 293 |
| CviQI | GTAC | 1 cut(s) | 24 |
| DdeI | CTNAG | 2 cut(s) | 6, 273 |
| DpnI | GATC | 1 cut(s) | 103 |
| DpnII | GATC | 1 cut(s) | 101 |
| Eam1104I | CTCTTC | 1 cut(s) | 35 |
| EarI | CTCTTC | 1 cut(s) | 35 |
| Ecl136II | GAGCTC | 1 cut(s) | 331 |
| Eco24I | GRGCYC | 1 cut(s) | 333 |
| Eco53kI | GAGCTC | 1 cut(s) | 331 |
| Eco57I | CTGAAG | 1 cut(s) | 272 |
| Eco88I | CYCGRG | 1 cut(s) | 332 |
| EcoICRI | GAGCTC | 1 cut(s) | 331 |
| EcoT38I | GRGCYC | 1 cut(s) | 333 |
| FaeI | CATG | 1 cut(s) | 296 |
| FaiI | YATR | 4 cut(s) | 282, 294, 308, 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 13, 45 |
| FatI | CATG | 1 cut(s) | 292 |
| Fnu4HI | GCNGC | 2 cut(s) | 270, 412 |
| FokI | GGATG | 1 cut(s) | 203 |
| FriOI | GRGCYC | 1 cut(s) | 333 |
| Fsp4HI | GCNGC | 2 cut(s) | 270, 412 |
| FspBI | CTAG | 2 cut(s) | 12, 369 |
| GluI | GCNGC | 2 cut(s) | 270, 412 |
| GsuI | CTGGAG | 1 cut(s) | 403 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| Hin1II | CATG | 1 cut(s) | 296 |
| HinfI | GANTC | 2 cut(s) | 134, 310 |
| Hpy188I | TCNGA | 1 cut(s) | 252 |
| Hpy188III | TCNNGA | 2 cut(s) | 12, 334 |
| HpyAV | CCTTC | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 2 cut(s) | 33, 406 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 182, 262, 324, 328 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 273 |
| Hsp92II | CATG | 1 cut(s) | 296 |
| Kzo9I | GATC | 1 cut(s) | 101 |
| LguI | GCTCTTC | 1 cut(s) | 35 |
| LmnI | GCTCC | 2 cut(s) | 262, 368 |
| LpnPI | CCDG | 3 cut(s) | 162, 332, 367 |
| Lsp1109I | GCAGC | 1 cut(s) | 398 |
| MaeI | CTAG | 2 cut(s) | 12, 369 |
| MaeIII | GTNAC | 2 cut(s) | 227, 377 |
| MalI | GATC | 1 cut(s) | 103 |
| MboI | GATC | 1 cut(s) | 101 |
| MboII | GAAGA | 4 cut(s) | 49, 52, 164, 349 |
| MhlI | GDGCHC | 2 cut(s) | 304, 333 |
| MluCI | AATT | 2 cut(s) | 60, 118 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 2 cut(s) | 147, 240 |
| MnlI | CCTC | 6 cut(s) | 157, 268, 289, 343, 353, 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 88 |
| MslI | CAYNNNNRTG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 182, 262, 324, 328 |
| NdeII | GATC | 1 cut(s) | 101 |
| NlaIII | CATG | 1 cut(s) | 296 |
| NlaIV | GGNNCC | 2 cut(s) | 301, 364 |
| PaeR7I | CTCGAG | 1 cut(s) | 332 |
| PciSI | GCTCTTC | 1 cut(s) | 35 |
| PdmI | GAANNNNTTC | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 310 |
| PkrI | GCNGC | 2 cut(s) | 271, 413 |
| PleI | GAGTC | 1 cut(s) | 128 |
| PpsI | GAGTC | 1 cut(s) | 128 |
| Psp124BI | GAGCTC | 1 cut(s) | 333 |
| PspN4I | GGNNCC | 2 cut(s) | 301, 364 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 7, 39, 370, 402 |
| RsaI | GTAC | 1 cut(s) | 25 |
| RsaNI | GTAC | 1 cut(s) | 24 |
| RseI | CAYNNNNRTG | 1 cut(s) | 297 |
| SacI | GAGCTC | 1 cut(s) | 333 |
| SapI | GCTCTTC | 1 cut(s) | 35 |
| SatI | GCNGC | 2 cut(s) | 270, 412 |
| Sau3AI | GATC | 1 cut(s) | 101 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| ScaI | AGTACT | 1 cut(s) | 25 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SduI | GDGCHC | 2 cut(s) | 304, 333 |
| SetI | ASST | 8 cut(s) | 57, 78, 187, 212, 258, 333, 400, 413 |
| Sfr274I | CTCGAG | 1 cut(s) | 332 |
| SlaI | CTCGAG | 1 cut(s) | 332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 297 |
| SmlI | CTYRAG | 1 cut(s) | 332 |
| SmoI | CTYRAG | 1 cut(s) | 332 |
| Sse9I | AATT | 2 cut(s) | 60, 118 |
| SsiI | CCGC | 1 cut(s) | 269 |
| SspMI | CTAG | 2 cut(s) | 12, 369 |
| SstI | GAGCTC | 1 cut(s) | 333 |
| TaqI | TCGA | 1 cut(s) | 333 |
| TasI | AATT | 2 cut(s) | 60, 118 |
| TatI | WGTACW | 1 cut(s) | 23 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 1 cut(s) | 310 |
| TseI | GCWGC | 1 cut(s) | 411 |
| TspDTI | ATGAA | 2 cut(s) | 81, 213 |
| XapI | RAATTY | 1 cut(s) | 118 |
| XbaI | TCTAGA | 1 cut(s) | 11 |
| XhoI | CTCGAG | 1 cut(s) | 332 |
| XmnI | GAANNNNTTC | 1 cut(s) | 88 |
| XspI | CTAG | 2 cut(s) | 12, 369 |
| ZrmI | AGTACT | 1 cut(s) | 25 |