RchiOBHm_Chr5g0057771

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004998
Physical Location & Seq
Reverse (-)
61917366 .. 61917707
342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33452

Sequence Viewer

Length: 342 bp
ATGGCTAACTCTAGAACTAGGGCGAAGAAGAACAGAAGTATTATCAAGCTCCAGTTTGTTGTAGAAAAGTTACAGAGGAGTCTGTTGTTAGGTCGAAATTTGAACTCTGATTGTAGTGATGATTCAACATATGTGCCCGGAGACGTCAAGGAAGGCCACTTTGCTGTTATTGCTGTGTACGGGAGCGAAGTGAAGAGACTTGTAGTGGCGTTGGGTTATTTGACGCATCCTAGATTCTTGGTGCTGTTGGAGCAAGCAGCGGAAATGTATGGTTTTAATCATGAGGGTGCCCTAACGTACGATTCCTTGCCCTCCAAGCAAGCTCGAGAATATATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

9.33

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 32 - 99 1.7e-10 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 179, 299
AgsI TTSAA 2 cut(s) 103, 126
AluBI AGCT 2 cut(s) 49, 323
AluI AGCT 2 cut(s) 49, 323
Alw26I GTCTC 2 cut(s) 135, 190
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 324
BaeGI GKGCMC 2 cut(s) 138, 292
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 135, 190
BfaI CTAG 3 cut(s) 12, 18, 231
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 2 cut(s) 138, 292
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 138
BsiWI CGTACG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 135, 190
BsmBI CGTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 138, 292
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 156
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 255, 321
BstF5I GGATG 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 135, 190
BstMWI GCNNNNNNNGC 3 cut(s) 170, 250, 316
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 2 cut(s) 138, 292
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 255, 321
CciI TCATGA 1 cut(s) 280
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 178, 298
CviAII CATG 1 cut(s) 281
CviJI RGCY 4 cut(s) 5, 49, 156, 323
CviKI_1 RGCY 4 cut(s) 5, 49, 156, 323
CviQI GTAC 2 cut(s) 178, 298
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 130, 132, 270, 282, 333
FatI CATG 1 cut(s) 280
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 3 cut(s) 12, 18, 231
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 284
HinfI GANTC 4 cut(s) 79, 122, 234, 302
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 12, 281, 326
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 2 cut(s) 144, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 250, 316
HpySE526I ACGT 2 cut(s) 144, 296
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 284
LmnI GCTCC 3 cut(s) 54, 183, 250
LpnPI CCDG 2 cut(s) 65, 151
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 235
MaeI CTAG 3 cut(s) 12, 18, 231
MaeII ACGT 2 cut(s) 144, 296
MaeIII GTNAC 1 cut(s) 69
MboII GAAGA 3 cut(s) 37, 40, 205
MhlI GDGCHC 2 cut(s) 138, 292
MluCI AATT 1 cut(s) 97
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 3 cut(s) 69, 277, 322
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 170, 250, 316
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 130
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 280
PfeI GAWTC 3 cut(s) 122, 234, 302
Pfl23II CGTACG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 179, 299
RsaNI GTAC 2 cut(s) 178, 298
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 258
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 138, 292
SetI ASST 5 cut(s) 51, 94, 147, 299, 325
SfaNI GCATC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 260
SspMI CTAG 3 cut(s) 12, 18, 231
StyD4I CCNGG 1 cut(s) 136
TaiI ACGT 2 cut(s) 147, 299
TaqI TCGA 2 cut(s) 94, 325
TasI AATT 1 cut(s) 97
TfiI GAWTC 3 cut(s) 122, 234, 302
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 1 cut(s) 257
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 11
XhoI CTCGAG 1 cut(s) 324
XspI CTAG 3 cut(s) 12, 18, 231
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.