RLG00000035176

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004998
Physical Location & Seq
Reverse (-)
62364728 .. 62365431
704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035176

Sequence Viewer

Length: 612 bp
ATGTCGTCCATGATTTTGGTGCGCATGGAGATTGATATGACAAAGGCTAAAGGGACGTCTCATGGGAAATTGGAAGCCAAGTCGCTCACTTCTCACATGGTGCTACTCTATCTAACACTACAAATACAAACCGAACCACCATACAAACCGTACAACAAGCAATTAAGCACAATTAATATGGCTAACTCTAGAACTAGGGCGAAGAAGAACAGAAGTATTATCAAGCTCCAGTTTGTTGTAGAAAAGTTACAGAGGAGTCTATTGTTGGGTCGAAATTTGAATTCTGATTGTAGTGATGATTCAACGTATGTGCCCGGAGACGTCAAGGAAGGCCACTTTGCTGTTATTGCTGTGTACGGGAGCGAAGTGAAGAGATTTGTAGTGGCGTTGGGTTATTTGACGCATCCCAGATTCTTGGTGCTGTTGGAGCAAGCAGCGGAAGTGTATGGTTTTAATCGTGAGGGTGCCCTAACGATTCCTTGCCCTCCAAGCAAGTTCGATAATATATTAGATGATGATCAATTGCAGCAGGAAGAGGAAGACTCCCCCTCATCTAGTGCTGATGTTAACTGGCCGATGTTCTCCCGAAGCTCTGGTGCAGAATACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

204

Amino Acids

22.81

Weight (kDa)

6.43

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 88 - 170 5.1e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 59, 324
Acc16I TGCGCA 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 464
AciI CCGC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 572
AcsI RAATTY 2 cut(s) 274, 280
AcyI GRCGYC 2 cut(s) 56, 321
AdeI CACNNNGTG 1 cut(s) 100
AfaI GTAC 2 cut(s) 152, 356
AgsI TTSAA 2 cut(s) 280, 303
AluBI AGCT 2 cut(s) 226, 591
AluI AGCT 2 cut(s) 226, 591
Alw26I GTCTC 2 cut(s) 63, 312
AoxI GGCC 2 cut(s) 331, 572
ApeKI GCWGC 2 cut(s) 434, 526
ApoI RAATTY 2 cut(s) 274, 280
AseI ATTAAT 1 cut(s) 174
AspLEI GCGC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 315, 469
BanI GGYRCC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 446, 538
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 63, 312
BfaI CTAG 4 cut(s) 189, 195, 555, 610
BisI GCNGC 2 cut(s) 435, 527
BlsI GCNGC 2 cut(s) 436, 528
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 516
BsaHI GRCGYC 2 cut(s) 56, 321
Bse1I ACTGG 2 cut(s) 229, 575
Bse8I GATNNNNATC 1 cut(s) 516
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 516
BseNI ACTGG 2 cut(s) 229, 575
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 2 cut(s) 315, 469
BseXI GCAGC 2 cut(s) 446, 538
BshFI GGCC 2 cut(s) 333, 574
BshNI GGYRCC 1 cut(s) 464
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 63, 312
BsmBI CGTCTC 2 cut(s) 63, 312
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 2 cut(s) 333, 574
Bsp1286I GDGCHC 2 cut(s) 315, 469
Bsp143I GATC 1 cut(s) 517
BspACI CCGC 1 cut(s) 437
BspANI GGCC 2 cut(s) 333, 574
BspLI GGNNCC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 2 cut(s) 229, 575
BssMI GATC 1 cut(s) 517
BssNI GRCGYC 2 cut(s) 56, 321
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 365, 528
BstACI GRCGYC 2 cut(s) 56, 321
BstC8I GCNNGC 1 cut(s) 432
BstF5I GGATG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 2 cut(s) 63, 312
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 3 cut(s) 347, 427, 489
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 315, 469
BstV1I GCAGC 2 cut(s) 446, 538
BstV2I GAAGAC 1 cut(s) 546
BstXI CCANNNNNNTGG 2 cut(s) 16, 415
BsuRI GGCC 2 cut(s) 333, 574
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 24
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 151, 355
CviAII CATG 4 cut(s) 10, 25, 62, 97
CviJI RGCY 7 cut(s) 47, 77, 182, 226, 333, 574, 591
CviKI_1 RGCY 7 cut(s) 47, 77, 182, 226, 333, 574, 591
CviQI GTAC 2 cut(s) 151, 355
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 572
Eam1104I CTCTTC 2 cut(s) 365, 528
EarI CTCTTC 2 cut(s) 365, 528
EcoRI GAATTC 1 cut(s) 280
Esp3I CGTCTC 2 cut(s) 63, 312
FaeI CATG 4 cut(s) 13, 28, 65, 100
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 9, 24, 61, 96
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 435, 527
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 435, 527
FspAI RTGCGCAY 1 cut(s) 23
FspBI CTAG 4 cut(s) 189, 195, 555, 610
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 435, 527
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 333, 574
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 409
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 2 cut(s) 56, 321
Hin1II CATG 4 cut(s) 13, 28, 65, 100
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 5 cut(s) 256, 299, 411, 475, 542
HpaI GTTAAC 1 cut(s) 568
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 2 cut(s) 355, 568
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 189, 458, 585
Hpy8I GTNNAC 2 cut(s) 355, 568
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 3 cut(s) 56, 305, 321
HpyCH4V TGCA 2 cut(s) 526, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 427, 489
HpySE526I ACGT 3 cut(s) 56, 305, 321
Hsp92I GRCGYC 2 cut(s) 56, 321
Hsp92II CATG 4 cut(s) 13, 28, 65, 100
HspAI GCGC 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 517
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 3 cut(s) 231, 360, 427
LpnPI CCDG 6 cut(s) 242, 328, 421, 515, 556, 579
Lsp1109I GCAGC 2 cut(s) 446, 538
LweI GCATC 1 cut(s) 412
MaeI CTAG 4 cut(s) 189, 195, 555, 610
MaeII ACGT 3 cut(s) 56, 305, 321
MaeIII GTNAC 1 cut(s) 246
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 5 cut(s) 214, 217, 382, 545, 551
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 315, 469
MluCI AATT 6 cut(s) 68, 161, 171, 274, 280, 521
MlyI GAGTC 2 cut(s) 265, 536
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 5 cut(s) 246, 454, 495, 529, 559
MseI TTAA 4 cut(s) 164, 174, 453, 567
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 521
MwoI GCNNNNNNNGC 3 cut(s) 347, 427, 489
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 517
NlaIII CATG 4 cut(s) 13, 28, 65, 100
NlaIV GGNNCC 1 cut(s) 466
NsbI TGCGCA 1 cut(s) 23
PfeI GAWTC 3 cut(s) 299, 411, 475
PkrI GCNGC 2 cut(s) 436, 528
PleI GAGTC 2 cut(s) 264, 536
PpsI GAGTC 2 cut(s) 264, 536
PshBI ATTAAT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 466
RsaI GTAC 2 cut(s) 152, 356
RsaNI GTAC 2 cut(s) 151, 355
SaqAI TTAA 4 cut(s) 164, 174, 453, 567
SatI GCNGC 2 cut(s) 435, 527
Sau3AI GATC 1 cut(s) 517
SchI GAGTC 2 cut(s) 265, 536
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 315, 469
SetI ASST 5 cut(s) 59, 228, 308, 324, 593
SfaNI GCATC 1 cut(s) 412
Sse9I AATT 6 cut(s) 68, 161, 171, 274, 280, 521
SsiI CCGC 1 cut(s) 437
SspMI CTAG 4 cut(s) 189, 195, 555, 610
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 3 cut(s) 59, 308, 324
TaqI TCGA 2 cut(s) 271, 498
TasI AATT 6 cut(s) 68, 161, 171, 274, 280, 521
TfiI GAWTC 3 cut(s) 299, 411, 475
Tru1I TTAA 4 cut(s) 164, 174, 453, 567
Tru9I TTAA 4 cut(s) 164, 174, 453, 567
TseI GCWGC 2 cut(s) 434, 526
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 2 cut(s) 274, 280
XbaI TCTAGA 1 cut(s) 188
XspI CTAG 4 cut(s) 189, 195, 555, 610
ZraI GACGTC 2 cut(s) 57, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.