Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Reverse (-)

14209982 .. 14211693

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGACGGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCGAGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTTCTGATTCAAGGGAAGAGAGTGGCGGAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAGCCTAAATGGGCTTCTGTTTCGTCTTACTGTAAACGTCACGGTGTAAATCGTGGGCCGGTTCAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAGTCTCAGATTAAGGAAGAGACTGAGTCCTATTGGGTTATGAGGAATGATGTTCGTAGAGAGAAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATTCCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCAGACGAGGGATTGTTGTCTGATTTAGATCGGAGAGAAAGTCCTGAGAAGTTGAATTCTACTCCGGTGGCTAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGTAGCAGATCAAGGTAGAGTGAAAGAGAAACAGCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAAGAAGAGAGGAAGCGTAAACGGACATCTTTTGGTGAAAAGGAAGAGGAAGAAGAAGAAGGAGAAACAAAGAAGATGCAGAATCAGTTGATAGAGATACTAGAAAGAAACGGGCAGTTGTTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAAGATCACGGTGATAGCTTAGTCGCTGTTCTCAATAAGCTCGCTGATGCTGTGGCAAAAATCGCGGATAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

314

Amino Acids

34.86

Weight (kDa)

6.01

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	38 - 127	2.1e-12	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	2 cut(s)	62, 932
AciI	CCGC	6 cut(s)	161, 188, 191, 470, 815, 932
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	559, 835
AcyI	GRCGYC	1 cut(s)	503
AgsI	TTSAA	2 cut(s)	146, 559
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	5 cut(s)	409, 617, 823, 885, 907
AluI	AGCT	5 cut(s)	409, 617, 823, 885, 907
Alw26I	GTCTC	4 cut(s)	97, 115, 348, 353
AlwI	GGATC	1 cut(s)	688
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	662
ApoI	RAATTY	2 cut(s)	559, 835
AspLEI	GCGC	3 cut(s)	35, 62, 64
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	737, 890
AvaI	CYCGRG	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	4 cut(s)	20, 49, 103, 114
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	4 cut(s)	97, 115, 348, 353
BfaI	CTAG	2 cut(s)	791, 851
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	3 cut(s)	189, 663, 816
BlsI	GCNGC	3 cut(s)	190, 664, 817
Bme1390I	CCNGG	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	222, 474, 498
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	756, 904
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	1 cut(s)	845
BsaBI	GATNNNNATC	2 cut(s)	531, 685
BsaHI	GRCGYC	1 cut(s)	503
BsaWI	WCCGGW	2 cut(s)	475, 568
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bse118I	RCCGGY	1 cut(s)	277
Bse8I	GATNNNNATC	2 cut(s)	531, 685
BseBI	CCWGG	1 cut(s)	414
BseJI	GATNNNNATC	2 cut(s)	531, 685
BseMII	CTCAG	3 cut(s)	354, 359, 540
BsePI	GCGCGC	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	62, 932
BshFI	GGCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	8 cut(s)	175, 278, 289, 312, 467, 476, 500, 569
BsmAI	GTCTC	4 cut(s)	97, 115, 348, 353
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	532, 628, 680, 871
BspACI	CCGC	6 cut(s)	161, 188, 191, 470, 815, 932
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	3 cut(s)	355, 358, 541
BspFNI	CGCG	2 cut(s)	62, 932
BspLI	GGNNCC	3 cut(s)	222, 474, 498
BspPI	GGATC	1 cut(s)	688
BsrBI	CCGCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssHII	GCGCGC	1 cut(s)	60
BssMI	GATC	4 cut(s)	532, 628, 680, 871
BssNI	GRCGYC	1 cut(s)	503
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	8 cut(s)	15, 44, 56, 77, 251, 263, 452, 878
Bst6I	CTCTTC	4 cut(s)	146, 351, 690, 729
BstACI	GRCGYC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	62, 909
BstDEI	CTNAG	4 cut(s)	345, 363, 549, 886
BstFNI	CGCG	2 cut(s)	62, 932
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	3 cut(s)	35, 62, 64
BstKTI	GATC	4 cut(s)	535, 631, 683, 874
BstMAI	GTCTC	4 cut(s)	97, 115, 348, 353
BstMBI	GATC	4 cut(s)	532, 628, 680, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 623, 929
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstUI	CGCG	2 cut(s)	62, 932
BstV1I	GCAGC	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	62, 909
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	3 cut(s)	35, 62, 64
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	1 cut(s)	492
DdeI	CTNAG	4 cut(s)	345, 363, 549, 886
DpnI	GATC	4 cut(s)	534, 630, 682, 873
DpnII	GATC	4 cut(s)	532, 628, 680, 871
DraI	TTTAAA	1 cut(s)	840
Eam1104I	CTCTTC	4 cut(s)	146, 351, 690, 729
EarI	CTCTTC	4 cut(s)	146, 351, 690, 729
EciI	GGCGGA	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	412
FaiI	YATR	5 cut(s)	197, 321, 380, 438, 596
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	189, 663, 816
Fsp4HI	GCNGC	3 cut(s)	189, 663, 816
FspBI	CTAG	2 cut(s)	791, 851
GlaI	GCGC	3 cut(s)	34, 61, 63
GluI	GCNGC	3 cut(s)	189, 663, 816
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	8 cut(s)	175, 278, 289, 312, 467, 476, 500, 569
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	3 cut(s)	35, 62, 64
Hin1I	GRCGYC	1 cut(s)	503
Hin6I	GCGC	3 cut(s)	33, 60, 62
HinP1I	GCGC	3 cut(s)	33, 60, 62
HincII	GTYRAC	2 cut(s)	40, 448
HindII	GTYRAC	2 cut(s)	40, 448
HindIII	AAGCTT	2 cut(s)	407, 615
HinfI	GANTC	7 cut(s)	130, 142, 171, 341, 365, 460, 772
HpaII	CCGG	8 cut(s)	175, 278, 289, 312, 467, 476, 500, 569
HphI	GGTGA	2 cut(s)	737, 890
Hpy166II	GTNNAC	4 cut(s)	40, 254, 448, 710
Hpy188I	TCNGA	6 cut(s)	141, 348, 508, 526, 537, 834
Hpy188III	TCNNGA	2 cut(s)	8, 548
Hpy8I	GTNNAC	4 cut(s)	40, 254, 448, 710
HpyAV	CCTTC	2 cut(s)	668, 743
HpyCH4III	ACNGT	8 cut(s)	15, 44, 56, 77, 251, 263, 452, 878
HpyCH4IV	ACGT	2 cut(s)	256, 669
HpyCH4V	TGCA	1 cut(s)	769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 623, 929
HpyF3I	CTNAG	4 cut(s)	345, 363, 549, 886
HpySE526I	ACGT	2 cut(s)	256, 669
Hsp92I	GRCGYC	1 cut(s)	503
HspAI	GCGC	3 cut(s)	33, 60, 62
Kzo9I	GATC	4 cut(s)	532, 628, 680, 871
LmnI	GCTCC	3 cut(s)	220, 300, 502
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	2 cut(s)	756, 904
MaeI	CTAG	2 cut(s)	791, 851
MaeII	ACGT	2 cut(s)	256, 669
MaeIII	GTNAC	2 cut(s)	257, 583
MalI	GATC	4 cut(s)	534, 630, 682, 873
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	4 cut(s)	532, 628, 680, 871
MluCI	AATT	2 cut(s)	559, 835
MlyI	GAGTC	3 cut(s)	180, 350, 374
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	9 cut(s)	120, 173, 375, 424, 474, 505, 693, 730, 820
MseI	TTAA	5 cut(s)	93, 330, 351, 839, 845
MspI	CCGG	8 cut(s)	175, 278, 289, 312, 467, 476, 500, 569
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	2 cut(s)	62, 932
MwoI	GCNNNNNNNGC	3 cut(s)	197, 623, 929
NdeII	GATC	4 cut(s)	532, 628, 680, 871
NlaIV	GGNNCC	3 cut(s)	222, 474, 498
NmuCI	GTSAC	1 cut(s)	257
PauI	GCGCGC	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	130, 142, 460, 772
PflFI	GACNNNGTC	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	190, 664, 817
PleI	GAGTC	3 cut(s)	179, 349, 373
PpsI	GAGTC	3 cut(s)	179, 349, 373
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	222, 474, 498
PspPI	GGNCC	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	587
PsyI	GACNNNGTC	1 cut(s)	364
PteI	GCGCGC	1 cut(s)	60
SaqAI	TTAA	5 cut(s)	93, 330, 351, 839, 845
SatI	GCNGC	3 cut(s)	189, 663, 816
Sau3AI	GATC	4 cut(s)	532, 628, 680, 871
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	3 cut(s)	180, 350, 374
ScrFI	CCNGG	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	756, 904
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	2 cut(s)	559, 835
SsiI	CCGC	6 cut(s)	161, 188, 191, 470, 815, 932
SspMI	CTAG	2 cut(s)	791, 851
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	8 cut(s)	15, 44, 56, 77, 251, 263, 452, 878
TaiI	ACGT	2 cut(s)	259, 672
TaqI	TCGA	2 cut(s)	423, 683
TasI	AATT	2 cut(s)	559, 835
TauI	GCSGC	2 cut(s)	191, 818
TfiI	GAWTC	4 cut(s)	130, 142, 460, 772
Tru1I	TTAA	5 cut(s)	93, 330, 351, 839, 845
Tru9I	TTAA	5 cut(s)	93, 330, 351, 839, 845
TscAI	CASTG	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	662
Tsp45I	GTSAC	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	1 cut(s)	290
Tth111I	GACNNNGTC	1 cut(s)	364
XapI	RAATTY	2 cut(s)	559, 835
XspI	CTAG	2 cut(s)	791, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.