Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

17905584 .. 17907715

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGGGAAATCAAGGTCCGGAAGCTAGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAAGGCCGCCAAGAATGAAAAACCCCTATTAATTAGTCGTCGTTGTTCTATACTTGTCTACTCTACTCATCTTGATCGCTCGGTCTCGGACTCTCTATACGATTCAGGCCAAAAACAGCCACCTTCAATTCCCGAGCTGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCGGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCGAATTCTCATTCGCAACCGGATAGGAGCAGAGGAAAGAACATTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

129

Amino Acids

14.81

Weight (kDa)

9.55

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	2 cut(s)	54, 75
AcsI	RAATTY	1 cut(s)	342
AfeI	AGCGCT	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	195
AluBI	AGCT	2 cut(s)	25, 205
AluI	AGCT	2 cut(s)	25, 205
Alw26I	GTCTC	2 cut(s)	68, 157
Ama87I	CYCGRG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	18
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	2 cut(s)	72, 175
ApoI	RAATTY	1 cut(s)	342
AseI	ATTAAT	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	16
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	68, 157
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	2 cut(s)	55, 75
BlsI	GCNGC	2 cut(s)	56, 76
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	2 cut(s)	18, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 177
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	19, 358
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	68, 157
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	74, 177
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	58, 142
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	2 cut(s)	74, 177
BspEI	TCCGGA	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	58, 142
BssT1I	CCWWGG	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	61, 145
BstMAI	GTCTC	2 cut(s)	68, 157
BstMBI	GATC	2 cut(s)	58, 142
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	74, 177
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	7 cut(s)	25, 74, 177, 187, 205, 323, 338
CviKI_1	RGCY	7 cut(s)	25, 74, 177, 187, 205, 323, 338
DpnI	GATC	2 cut(s)	60, 144
DpnII	GATC	2 cut(s)	58, 142
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	119, 166, 299
FatI	CATG	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	55, 75
Fsp4HI	GCNGC	2 cut(s)	55, 75
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	55, 75
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	74, 177
HapII	CCGG	2 cut(s)	19, 358
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	158, 170, 280
HpaII	CCGG	2 cut(s)	19, 358
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	157, 386
Hpy188III	TCNNGA	4 cut(s)	19, 140, 200, 221
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	2 cut(s)	47, 111
HpyAV	CCTTC	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	245, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	58, 142
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	5 cut(s)	32, 159, 191, 305, 371
MaeI	CTAG	1 cut(s)	26
MalI	GATC	2 cut(s)	60, 144
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	58, 142
MluCI	AATT	3 cut(s)	99, 195, 342
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	41, 250, 253, 286, 328, 364
MroI	TCCGGA	1 cut(s)	18
MseI	TTAA	1 cut(s)	98
MspI	CCGG	2 cut(s)	19, 358
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	58, 142
NlaIII	CATG	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	170, 280
PkrI	GCNGC	2 cut(s)	56, 76
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	55, 75
Sau3AI	GATC	2 cut(s)	58, 142
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	152
SetI	ASST	5 cut(s)	18, 27, 193, 207, 297
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	3 cut(s)	99, 195, 342
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	340
TaqII	GACCGA	2 cut(s)	139, 240
TasI	AATT	3 cut(s)	99, 195, 342
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	2 cut(s)	170, 280
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	98
XapI	RAATTY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.