Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

25448540 .. 25451421

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCCTTGGAGTTCGAGCAGGACCATAGCCAGCGGCAGTTGGGTCTCGCCGTCAGCGTTGACGGCGACGCTAACGGCGGGGAAGACGGCGGCAAGGCGCCGAGGCTGCCGCGGTGGACGCGGCAGGAGATTCTGGTGCTGATAAGGGGGAAGAGGGCGGCGGAGAGCCGCGGCGGAGGAGGGAGGACGGCGAGGTCGGAGTTCGGGTCGTCGTCGGGTTCGGGTCAGGTGGAGCCGAAATGGGCGGCGGTGTCGACGTACTGCAAGAAGCATGGGGTGAACCGGGGGCCGGTGCAGTGCCGGAAGAGGTGGAGCAACCTGGCCGGAGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAAGACGAAACGGAGTCGTTTTGGGTGATGAGGAATGATTTGAGGAGGGAGAGGAAGCTTCCCGGGTTTTTTGATAAGGAAGTTTATGATATTATGGAGGCTGTTGCGGCGGGAGGGGCGGCGCCGGTTACGATCGCGTTGGCGCCGCCGTTGATGAACGACGAGGTGGAGAAGCTGTTTGACAGCAGGCAGGGGCCCACTGACGACGGGTTGTTTTCGGATTACGAGCAGGAGGAGTCGGGTCGGAGCCCCGATAAGGAAGTGACCCGGGGGAAAAGTCCGGGGAGTAACACCGGGATTCCGGCGCCTTTGCCAATATCGGAGAAGCTGTTCAAACCAGTACAACTGTGCCCAGTACAAGGCCAAAAACAGCCACCTTCAATTCCCGAGGTGGGTTCTACTTCTCAAGACCGGAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGAAATGGTAAAATGCTGGCTGACTACTTTGAGGCTCAGAATTCACATTCACAACTGGATAGGGAGCAGAGAAAAGAACATTCTGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCCGATAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

334

Amino Acids

37.13

Weight (kDa)

6.5

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	40 - 134	9.3e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	193
AccB1I	GGYRCC	4 cut(s)	97, 484, 505, 667
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	4 cut(s)	112, 121, 171, 500
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	892
AcyI	GRCGYC	4 cut(s)	98, 485, 506, 668
AfaI	GTAC	3 cut(s)	260, 705, 720
AfeI	AGCGCT	1 cut(s)	788
AfiI	CCNNNNNNNGG	4 cut(s)	289, 619, 722, 755
AgsI	TTSAA	2 cut(s)	697, 744
AjnI	CCWGG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AluBI	AGCT	5 cut(s)	421, 538, 691, 942, 964
AluI	AGCT	5 cut(s)	421, 538, 691, 942, 964
Alw26I	GTCTC	2 cut(s)	50, 321
Ama87I	CYCGRG	3 cut(s)	425, 630, 749
Aor51HI	AGCGCT	1 cut(s)	788
AoxI	GGCC	5 cut(s)	3, 287, 321, 557, 724
ApaI	GGGCCC	1 cut(s)	561
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	892
Asp700I	GAANNNNTTC	1 cut(s)	692
AspLEI	GCGC	6 cut(s)	100, 358, 487, 508, 670, 789
AspS9I	GGNCC	4 cut(s)	22, 287, 557, 558
AsuC2I	CCSGG	7 cut(s)	284, 426, 427, 631, 632, 645, 658
AsuHPI	GGTGA	2 cut(s)	289, 400
AvaI	CYCGRG	3 cut(s)	425, 630, 749
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	2 cut(s)	561, 716
BanI	GGYRCC	4 cut(s)	97, 484, 505, 667
BanII	GRGCYC	2 cut(s)	561, 614
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	794
BceAI	ACGGC	6 cut(s)	35, 79, 91, 103, 204, 496
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	7 cut(s)	284, 426, 427, 631, 632, 645, 658
BcoDI	GTCTC	2 cut(s)	50, 321
BfoI	RGCGCY	5 cut(s)	101, 488, 509, 671, 790
Bme1390I	CCNGG	8 cut(s)	284, 320, 426, 427, 631, 632, 645, 658
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	3 cut(s)	425, 630, 749
BmgT120I	GGNCC	4 cut(s)	22, 287, 557, 558
BmiI	GGNNCC	9 cut(s)	99, 234, 288, 486, 507, 558, 559, 611, 669
BmrFI	CCNGG	8 cut(s)	284, 320, 426, 427, 631, 632, 645, 658
BmrI	ACTGGG	1 cut(s)	710
BmsI	GCATC	1 cut(s)	961
BmuI	ACTGGG	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	7 cut(s)	284, 426, 427, 631, 632, 645, 658
BsaHI	GRCGYC	4 cut(s)	98, 485, 506, 668
BsaI	GGTCTC	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	774
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 524, 554, 677, 707
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 619, 722, 755
Bse118I	RCCGGY	2 cut(s)	289, 487
Bse1I	ACTGG	3 cut(s)	701, 716, 912
BseBI	CCWGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	4 cut(s)	289, 619, 722, 755
BseMII	CTCAG	1 cut(s)	902
BseNI	ACTGG	3 cut(s)	701, 716, 912
BseRI	GAGGAG	4 cut(s)	192, 421, 611, 821
BseSI	GKGCMC	2 cut(s)	561, 716
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	4 cut(s)	112, 121, 171, 500
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	5 cut(s)	5, 289, 323, 559, 726
BshNI	GGYRCC	4 cut(s)	97, 484, 505, 667
BsiEI	CGRYCG	1 cut(s)	498
BsiHKCI	CYCGRG	3 cut(s)	425, 630, 749
BslI	CCNNNNNNNGG	4 cut(s)	289, 619, 722, 755
BsmAI	GTCTC	2 cut(s)	50, 321
BsnI	GGCC	5 cut(s)	5, 289, 323, 559, 726
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	3 cut(s)	425, 630, 749
Bsp120I	GGGCCC	1 cut(s)	557
Bsp1286I	GDGCHC	3 cut(s)	561, 614, 716
Bsp143I	GATC	2 cut(s)	339, 495
BspANI	GGCC	5 cut(s)	5, 289, 323, 559, 726
BspCNI	CTCAG	1 cut(s)	901
BspFNI	CGCG	4 cut(s)	112, 121, 171, 500
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	9 cut(s)	99, 234, 288, 486, 507, 558, 559, 611, 669
BspT107I	GGYRCC	4 cut(s)	97, 484, 505, 667
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	289, 487
BsrI	ACTGG	3 cut(s)	701, 716, 912
BssAI	RCCGGY	2 cut(s)	289, 487
BssMI	GATC	2 cut(s)	339, 495
BssNI	GRCGYC	4 cut(s)	98, 485, 506, 668
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	711
Bst6I	CTCTTC	2 cut(s)	146, 299
BstACI	GRCGYC	4 cut(s)	98, 485, 506, 668
BstC8I	GCNNGC	4 cut(s)	32, 551, 870, 966
BstDEI	CTNAG	1 cut(s)	888
BstDSI	CCRYGG	2 cut(s)	110, 169
BstFNI	CGCG	4 cut(s)	112, 121, 171, 500
BstH2I	RGCGCY	5 cut(s)	101, 488, 509, 671, 790
BstHHI	GCGC	6 cut(s)	100, 358, 487, 508, 670, 789
BstKTI	GATC	2 cut(s)	342, 498
BstMAI	GTCTC	2 cut(s)	50, 321
BstMBI	GATC	2 cut(s)	339, 495
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 106, 118, 470, 479
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	8 cut(s)	282, 318, 424, 425, 629, 630, 643, 656
BstSLI	GKGCMC	2 cut(s)	561, 716
BstUI	CGCG	4 cut(s)	112, 121, 171, 500
BstV1I	GCAGC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	5 cut(s)	5, 289, 323, 559, 726
BtgI	CCRYGG	2 cut(s)	110, 169
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 561
Cac8I	GCNNGC	4 cut(s)	32, 551, 870, 966
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	6 cut(s)	100, 358, 487, 508, 670, 789
Cfr10I	RCCGGY	2 cut(s)	289, 487
Cfr13I	GGNCC	4 cut(s)	22, 287, 557, 558
Cfr42I	CCGCGG	2 cut(s)	113, 172
Cfr9I	CCCGGG	2 cut(s)	425, 630
CseI	GACGC	2 cut(s)	77, 127
Csp6I	GTAC	3 cut(s)	259, 704, 719
CviAII	CATG	3 cut(s)	272, 847, 979
CviQI	GTAC	3 cut(s)	259, 704, 719
DdeI	CTNAG	1 cut(s)	888
DinI	GGCGCC	4 cut(s)	99, 486, 507, 669
DpnI	GATC	2 cut(s)	341, 497
DpnII	GATC	2 cut(s)	339, 495
DrdI	GACNNNNNNGTC	1 cut(s)	193
DseDI	GACNNNNNNGTC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	146, 299
EarI	CTCTTC	2 cut(s)	146, 299
EciI	GGCGGA	2 cut(s)	176, 189
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	561, 614
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	788
Eco88I	CYCGRG	3 cut(s)	425, 630, 749
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	561, 614
EgeI	GGCGCC	4 cut(s)	99, 486, 507, 669
EheI	GGCGCC	4 cut(s)	99, 486, 507, 669
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	275, 850, 982
FaiI	YATR	6 cut(s)	27, 273, 450, 458, 848, 980
FatI	CATG	3 cut(s)	271, 846, 978
FauI	CCCGC	2 cut(s)	71, 466
FblI	GTMKAC	1 cut(s)	254
FriOI	GRGCYC	2 cut(s)	561, 614
GlaI	GCGC	6 cut(s)	99, 357, 486, 507, 669, 788
HaeII	RGCGCY	5 cut(s)	101, 488, 509, 671, 790
HaeIII	GGCC	5 cut(s)	5, 289, 323, 559, 726
HgaI	GACGC	2 cut(s)	77, 127
HhaI	GCGC	6 cut(s)	100, 358, 487, 508, 670, 789
Hin1I	GRCGYC	4 cut(s)	98, 485, 506, 668
Hin1II	CATG	3 cut(s)	275, 850, 982
Hin6I	GCGC	6 cut(s)	98, 356, 485, 506, 668, 787
HinP1I	GCGC	6 cut(s)	98, 356, 485, 506, 668, 787
HincII	GTYRAC	2 cut(s)	61, 255
HindII	GTYRAC	2 cut(s)	61, 255
HindIII	AAGCTT	2 cut(s)	419, 962
HinfI	GANTC	6 cut(s)	130, 377, 599, 661, 829, 984
HphI	GGTGA	2 cut(s)	289, 400
Hpy166II	GTNNAC	4 cut(s)	61, 117, 255, 280
Hpy188I	TCNGA	6 cut(s)	199, 583, 609, 685, 891, 937
Hpy188III	TCNNGA	3 cut(s)	749, 770, 979
Hpy8I	GTNNAC	4 cut(s)	61, 117, 255, 280
Hpy99I	CGWCG	6 cut(s)	71, 214, 217, 259, 527, 572
HpyAV	CCTTC	1 cut(s)	750
HpyCH4III	ACNGT	1 cut(s)	711
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	264, 295, 794, 826, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 106, 118, 470, 479
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	1 cut(s)	257
Hsp92I	GRCGYC	4 cut(s)	98, 485, 506, 668
Hsp92II	CATG	3 cut(s)	275, 850, 982
HspAI	GCGC	6 cut(s)	98, 356, 485, 506, 668, 787
KasI	GGCGCC	4 cut(s)	97, 484, 505, 667
KspI	CCGCGG	2 cut(s)	113, 172
Kzo9I	GATC	2 cut(s)	339, 495
LmnI	GCTCC	4 cut(s)	232, 312, 609, 916
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	961
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	3 cut(s)	490, 625, 650
MalI	GATC	2 cut(s)	341, 497
MboI	GATC	2 cut(s)	339, 495
MboII	GAAGA	4 cut(s)	95, 163, 316, 349
MhlI	GDGCHC	3 cut(s)	561, 614, 716
MluCI	AATT	3 cut(s)	744, 892, 945
Mly113I	GGCGCC	4 cut(s)	98, 485, 506, 668
MlyI	GAGTC	2 cut(s)	386, 608
MmeI	TCCRAC	2 cut(s)	177, 587
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	3 cut(s)	333, 944, 957
MspA1I	CMGCKG	3 cut(s)	34, 112, 171
MspR9I	CCNGG	8 cut(s)	284, 320, 426, 427, 631, 632, 645, 658
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	4 cut(s)	112, 121, 171, 500
MwoI	GCNNNNNNNGC	5 cut(s)	63, 106, 118, 470, 479
NarI	GGCGCC	4 cut(s)	98, 485, 506, 668
NciI	CCSGG	7 cut(s)	284, 426, 427, 631, 632, 645, 658
NdeII	GATC	2 cut(s)	339, 495
NlaIII	CATG	3 cut(s)	275, 850, 982
NlaIV	GGNNCC	9 cut(s)	99, 234, 288, 486, 507, 558, 559, 611, 669
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	625
PagI	TCATGA	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	130, 661, 829, 984
Ple19I	CGATCG	1 cut(s)	498
PleI	GAGTC	2 cut(s)	385, 607
PluTI	GGCGCC	4 cut(s)	101, 488, 509, 671
PpsI	GAGTC	2 cut(s)	385, 607
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	9 cut(s)	99, 234, 288, 486, 507, 558, 559, 611, 669
PspOMI	GGGCCC	1 cut(s)	557
PspPI	GGNCC	4 cut(s)	22, 287, 557, 558
PvuI	CGATCG	1 cut(s)	498
RsaI	GTAC	3 cut(s)	260, 705, 720
RsaNI	GTAC	3 cut(s)	259, 704, 719
SacII	CCGCGG	2 cut(s)	113, 172
SalI	GTCGAC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	333, 944, 957
Sau3AI	GATC	2 cut(s)	339, 495
Sau96I	GGNCC	4 cut(s)	22, 287, 557, 558
SchI	GAGTC	2 cut(s)	386, 608
ScrFI	CCNGG	8 cut(s)	284, 320, 426, 427, 631, 632, 645, 658
SduI	GDGCHC	3 cut(s)	561, 614, 716
SfaNI	GCATC	1 cut(s)	961
SfoI	GGCGCC	4 cut(s)	99, 486, 507, 669
Sfr303I	CCGCGG	2 cut(s)	113, 172
SgrBI	CCGCGG	2 cut(s)	113, 172
SinI	GGWCC	1 cut(s)	22
SmaI	CCCGGG	2 cut(s)	427, 632
SmlI	CTYRAG	1 cut(s)	768
SmoI	CTYRAG	1 cut(s)	768
Sse9I	AATT	3 cut(s)	744, 892, 945
SspDI	GGCGCC	4 cut(s)	97, 484, 505, 667
StyD4I	CCNGG	8 cut(s)	282, 318, 424, 425, 629, 630, 643, 656
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	711
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	15, 254
TasI	AATT	3 cut(s)	744, 892, 945
TatI	WGTACW	2 cut(s)	703, 718
TfiI	GAWTC	4 cut(s)	130, 661, 829, 984
Tru1I	TTAA	3 cut(s)	333, 944, 957
Tru9I	TTAA	3 cut(s)	333, 944, 957
TscAI	CASTG	2 cut(s)	302, 568
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	2 cut(s)	533, 967
TspGWI	ACGGA	1 cut(s)	389
TspMI	CCCGGG	2 cut(s)	425, 630
TspRI	CASTG	2 cut(s)	302, 568
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	892
XmaI	CCCGGG	2 cut(s)	425, 630
XmiI	GTMKAC	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.