Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Reverse (-)

39570878 .. 39573674

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGATCAGCAAGGGCATGGGCATCCAACAACAATGGGAGTCCCAGGTAGTGCAGGTCAAGCATCATATGGTGTGAACCCATATCAGCCTAGCCAAATGATGGGACTCTCTCCAACTGGATCGGTTGGAATGATGCAATCTCCCACTCAGCCGGGAGGTCCTTCTCAGCTTGCACAACACCAAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTACAGCAACAACTCCAAAACTTTTGGTCAGGTCAGTATCAAGAAATTGAGCAGGCTAATGATTTCAAGAACCATAGTTTACCATTGGCCAGGATTAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCTGCTGAAGCTCCGGTCATATTTGCCAGGGCCTGTGAGATGTTTATTCTGGAGTTGACACTACGGTCTTGGAACCACACAGAGGAGAACAAAAGGAGAACATTGCAAAAGAATGACATTGCGGCAGCAATTACAAGGACTGATATATTTGATTTTCTAGTTGATATCGTCCCCAGAGAGGATTTGAAAGATGAGGTTCTTGCATCAATCCCAAGAGGTGGGAATGTTCCAGTTGTCGGTCCAGCTGATGGTCTTCCTTACTATTACATGCCTGCTCAACATCCACCACAGGTTGGTGCTCCCGGGATGATGGTGGGAAAGCCTGTGATGGATCAAAATATGTATGGCCAACCAACACATCCATACATGGCTCAGCCAGCTTGGCCTCAGCAACAACAGCCGCACAAAGATTCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

257

Amino Acids

28.69

Weight (kDa)

5.9

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	91 - 162	4.1e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	99 - 162	3.1e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	44
AccB7I	CCANNNNNTGG	4 cut(s)	100, 572, 602, 647
AciI	CCGC	2 cut(s)	476, 755
AclWI	GGATC	3 cut(s)	12, 127, 693
AcoI	YGGCCR	2 cut(s)	306, 700
AcuI	CTGAAG	1 cut(s)	381
AfiI	CCNNNNNNNGG	7 cut(s)	100, 436, 532, 572, 590, 602, 647
AgsI	TTSAA	2 cut(s)	286, 541
AjnI	CCWGG	3 cut(s)	43, 308, 380
AluBI	AGCT	5 cut(s)	169, 185, 365, 599, 734
AluI	AGCT	5 cut(s)	169, 185, 365, 599, 734
Alw21I	GWGCWC	1 cut(s)	655
AlwI	GGATC	3 cut(s)	12, 127, 693
AlwNI	CAGNNNCTG	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	4 cut(s)	306, 384, 700, 737
ApeKI	GCWGC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	158, 384, 593
AsuC2I	CCSGG	3 cut(s)	153, 657, 658
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	158, 593
BalI	TGGCCA	2 cut(s)	308, 702
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	655
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	4 cut(s)	94, 596, 658, 676
BciT130I	CCWGG	3 cut(s)	45, 310, 382
BcnI	CCSGG	3 cut(s)	153, 657, 658
BfaI	CTAG	2 cut(s)	90, 512
BfmI	CTRYAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	736
BisI	GCNGC	3 cut(s)	477, 480, 755
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	3 cut(s)	478, 481, 756
Bme1390I	CCNGG	6 cut(s)	45, 153, 310, 382, 657, 658
Bme18I	GGWCC	2 cut(s)	158, 593
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	158, 384, 593
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	6 cut(s)	45, 153, 310, 382, 657, 658
BmsI	GCATC	4 cut(s)	31, 71, 123, 566
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuMI	CCSGG	3 cut(s)	153, 657, 658
BsaJI	CCNNGG	3 cut(s)	43, 381, 656
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	7 cut(s)	100, 436, 532, 572, 590, 602, 647
Bse1I	ACTGG	2 cut(s)	121, 584
Bse3DI	GCAATG	2 cut(s)	455, 471
BseBI	CCWGG	3 cut(s)	45, 310, 382
BseDI	CCNNGG	3 cut(s)	43, 381, 656
BseGI	GGATG	7 cut(s)	22, 195, 346, 354, 634, 666, 712
BseLI	CCNNNNNNNGG	7 cut(s)	100, 436, 532, 572, 590, 602, 647
BseMI	GCAATG	2 cut(s)	455, 471
BseMII	CTCAG	5 cut(s)	161, 179, 740, 755, 759
BseNI	ACTGG	2 cut(s)	121, 584
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	1 cut(s)	491
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	308, 386, 702, 739
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	152, 368, 657
BslFI	GGGAC	3 cut(s)	26, 117, 509
BslI	CCNNNNNNNGG	7 cut(s)	100, 436, 532, 572, 590, 602, 647
BsmFI	GGGAC	3 cut(s)	26, 117, 509
BsnI	GGCC	4 cut(s)	308, 386, 702, 739
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	4, 119, 685
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	2 cut(s)	476, 755
BspANI	GGCC	4 cut(s)	308, 386, 702, 739
BspCNI	CTCAG	5 cut(s)	160, 178, 739, 754, 760
BspLI	GGNNCC	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	12, 127, 693
BsrDI	GCAATG	2 cut(s)	455, 471
BsrI	ACTGG	2 cut(s)	121, 584
BssECI	CCNNGG	3 cut(s)	43, 381, 656
BssMI	GATC	3 cut(s)	4, 119, 685
Bst2UI	CCWGG	3 cut(s)	45, 310, 382
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	171, 273, 627, 732
BstDEI	CTNAG	5 cut(s)	147, 165, 726, 741, 768
BstF5I	GGATG	7 cut(s)	22, 195, 346, 354, 634, 666, 712
BstKTI	GATC	3 cut(s)	7, 122, 688
BstMBI	GATC	3 cut(s)	4, 119, 685
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 223, 731, 736, 751
BstNI	CCWGG	3 cut(s)	45, 310, 382
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	6 cut(s)	43, 151, 308, 380, 655, 656
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	308, 386, 702, 739
BtsCI	GGATG	7 cut(s)	22, 195, 346, 354, 634, 666, 712
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	171, 273, 627, 732
CaiI	CAGNNNCTG	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	158, 384, 593
Cfr9I	CCCGGG	1 cut(s)	656
CviAII	CATG	3 cut(s)	17, 622, 721
DdeI	CTNAG	5 cut(s)	147, 165, 726, 741, 768
DpnI	GATC	3 cut(s)	6, 121, 687
DpnII	GATC	3 cut(s)	4, 119, 685
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	306, 700
Eco32I	GATATC	2 cut(s)	354, 520
Eco47I	GGWCC	2 cut(s)	158, 593
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	656
EcoO109I	RGGNCCY	2 cut(s)	158, 384
EcoRII	CCWGG	3 cut(s)	43, 308, 380
EcoRV	GATATC	2 cut(s)	354, 520
FaeI	CATG	3 cut(s)	20, 625, 724
FaqI	GGGAC	3 cut(s)	26, 117, 509
FatI	CATG	3 cut(s)	16, 621, 720
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	477, 480, 755
FokI	GGATG	7 cut(s)	9, 182, 353, 361, 621, 673, 699
Fsp4HI	GCNGC	3 cut(s)	477, 480, 755
FspBI	CTAG	2 cut(s)	90, 512
GluI	GCNGC	3 cut(s)	477, 480, 755
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	4 cut(s)	308, 386, 702, 739
HapII	CCGG	3 cut(s)	152, 368, 657
Hin1II	CATG	3 cut(s)	20, 625, 724
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	3 cut(s)	39, 105, 764
HpaII	CCGG	3 cut(s)	152, 368, 657
Hpy166II	GTNNAC	3 cut(s)	76, 299, 411
Hpy188I	TCNGA	1 cut(s)	769
Hpy188III	TCNNGA	3 cut(s)	260, 286, 404
Hpy8I	GTNNAC	3 cut(s)	76, 299, 411
HpyAV	CCTTC	2 cut(s)	171, 322
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	5 cut(s)	53, 136, 173, 460, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 223, 731, 736, 751
HpyF3I	CTNAG	5 cut(s)	147, 165, 726, 741, 768
Hsp92II	CATG	3 cut(s)	20, 625, 724
Kzo9I	GATC	3 cut(s)	4, 119, 685
LmnI	GCTCC	2 cut(s)	370, 658
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	4 cut(s)	31, 71, 123, 566
MaeI	CTAG	2 cut(s)	90, 512
MalI	GATC	3 cut(s)	6, 121, 687
MboI	GATC	3 cut(s)	4, 119, 685
MboII	GAAGA	2 cut(s)	331, 599
MhlI	GDGCHC	1 cut(s)	655
MlsI	TGGCCA	2 cut(s)	308, 702
MluCI	AATT	2 cut(s)	264, 483
MluNI	TGGCCA	2 cut(s)	308, 702
MlyI	GAGTC	2 cut(s)	48, 99
MmeI	TCCRAC	3 cut(s)	50, 106, 137
MnlI	CCTC	7 cut(s)	149, 331, 430, 526, 541, 563, 750
Mox20I	TGGCCA	2 cut(s)	308, 702
MscI	TGGCCA	2 cut(s)	308, 702
MseI	TTAA	1 cut(s)	315
Msp20I	TGGCCA	2 cut(s)	308, 702
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	3 cut(s)	152, 368, 657
MspR9I	CCNGG	6 cut(s)	45, 153, 310, 382, 657, 658
MvaI	CCWGG	3 cut(s)	45, 310, 382
MwoI	GCNNNNNNNGC	5 cut(s)	59, 223, 731, 736, 751
NciI	CCSGG	3 cut(s)	153, 657, 658
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	3 cut(s)	4, 119, 685
NlaIII	CATG	3 cut(s)	20, 625, 724
NlaIV	GGNNCC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	764
PflMI	CCANNNNNTGG	4 cut(s)	100, 572, 602, 647
PkrI	GCNGC	3 cut(s)	478, 481, 756
PleI	GAGTC	2 cut(s)	47, 99
PpsI	GAGTC	2 cut(s)	47, 99
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	43, 308, 380
PspGI	CCWGG	3 cut(s)	43, 308, 380
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	158, 384, 593
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	477, 480, 755
Sau3AI	GATC	3 cut(s)	4, 119, 685
Sau96I	GGNCC	3 cut(s)	158, 384, 593
SchI	GAGTC	2 cut(s)	48, 99
ScrFI	CCNGG	6 cut(s)	45, 153, 310, 382, 657, 658
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	4 cut(s)	31, 71, 123, 566
SfcI	CTRYAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	158, 593
SmaI	CCCGGG	1 cut(s)	658
Sse9I	AATT	2 cut(s)	264, 483
SsiI	CCGC	2 cut(s)	476, 755
SspMI	CTAG	2 cut(s)	90, 512
StyD4I	CCNGG	6 cut(s)	43, 151, 308, 380, 655, 656
TaaI	ACNGT	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	581
TasI	AATT	2 cut(s)	264, 483
TauI	GCSGC	2 cut(s)	479, 757
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	341
TspMI	CCCGGG	1 cut(s)	656
Van91I	CCANNNNNTGG	4 cut(s)	100, 572, 602, 647
VpaK11BI	GGWCC	2 cut(s)	158, 593
XceI	RCATGY	1 cut(s)	625
XmaI	CCCGGG	1 cut(s)	656
XspI	CTAG	2 cut(s)	90, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.