RchiOBHm_Chr4g0428941
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006660
Physical Location & Seq
Forward (+)
53843675 .. 53846268
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39778

Sequence Viewer

Length: 1062 bp
ATGGTCATGGCCTTGGAGTTCGAGCAGCAGCATCAGCAGTTGAGTCTCACCACCAACCCCGTTGACGGCGACACTAACGGCGTCGACGCTGCGGCGGGGCGAGCCTCAGCCGAGGCCGGGGATGACTCCAGCAAGGCGCCGAGGCTGCCGCGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGGAAGCGGGCGGCGGAGAGCCGGGGCGGCGGCGGGAGGACGGCGAGGTCTGAGTTCGGGTCGGGTCAGGCGGAGCCGAAATGGGCCGCGGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGAGGAGAGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTACGATATAATGGAGGCCGTTTCCGGCGCCGGCGCTCCGGTTACGCTGGCTCTGGCTCCGCCGCCGCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGATGAGGTGGAGAAGCTTTTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGAGGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCTTTGCCAATATCAGAGAAGCTGTTCAAACCAATACAAGCGTCCCAAGGACAAGGTGCGGCAGGCCAAAAACAGCCACCTTCAATTCCCGAGATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCAGAATTCTCATTCGCAACTGGATAGGGAGCAGAGGAAAGAACATTCTGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCCGATAAGTTGTAG

Protein Analysis

353

Amino Acids

39.28

Weight (kDa)

5.83

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 51 - 141 1.1e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AccB1I GGYRCC 2 cut(s) 136, 500
AccI GTMKAC 1 cut(s) 84
AccII CGCG 4 cut(s) 151, 275, 312, 710
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 952
AcuI CTGAAG 1 cut(s) 590
AcyI GRCGYC 3 cut(s) 81, 137, 501
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 1 cut(s) 287
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 6 cut(s) 65, 117, 316, 574, 682, 815
AgsI TTSAA 2 cut(s) 748, 804
AluBI AGCT 6 cut(s) 448, 601, 719, 742, 1002, 1024
AluI AGCT 6 cut(s) 448, 601, 719, 742, 1002, 1024
Alw26I GTCTC 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 809
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 9 cut(s) 9, 114, 270, 314, 348, 489, 555, 620, 784
ApaI GGGCCC 1 cut(s) 624
ApeKI GCWGC 5 cut(s) 25, 28, 89, 145, 448
ApoI RAATTY 1 cut(s) 952
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 5 cut(s) 139, 385, 503, 509, 849
AspS9I GGNCC 6 cut(s) 156, 270, 314, 319, 620, 621
AsuC2I CCSGG 4 cut(s) 118, 160, 209, 453
AsuHPI GGTGA 3 cut(s) 40, 316, 427
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 2 cut(s) 156, 319
BaeGI GKGCMC 1 cut(s) 624
BanI GGYRCC 2 cut(s) 136, 500
BanII GRGCYC 2 cut(s) 624, 677
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 5 cut(s) 37, 40, 76, 132, 435
BccI CCATC 3 cut(s) 538, 808, 854
BceAI ACGGC 4 cut(s) 82, 94, 243, 476
BcnI CCSGG 4 cut(s) 118, 160, 209, 453
BcoDI GTCTC 1 cut(s) 50
BfoI RGCGCY 4 cut(s) 140, 504, 510, 850
BglI GCCNNNNNGGC 1 cut(s) 213
Bme1390I CCNGG 4 cut(s) 118, 160, 209, 453
Bme18I GGWCC 2 cut(s) 156, 319
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 6 cut(s) 156, 270, 314, 319, 620, 621
BmiI GGNNCC 8 cut(s) 138, 158, 261, 502, 531, 621, 622, 674
BmrFI CCNGG 4 cut(s) 118, 160, 209, 453
BmsI GCATC 2 cut(s) 40, 1021
BpmI CTGGAG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 813
BpuMI CCSGG 4 cut(s) 118, 160, 209, 453
BsaHI GRCGYC 3 cut(s) 81, 137, 501
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 6 cut(s) 65, 117, 316, 574, 682, 815
Bse118I RCCGGY 3 cut(s) 316, 350, 503
Bse1I ACTGG 2 cut(s) 322, 972
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 6 cut(s) 65, 117, 316, 574, 682, 815
BseMII CTCAG 3 cut(s) 120, 228, 962
BseNI ACTGG 2 cut(s) 322, 972
BseRI GAGGAG 3 cut(s) 448, 674, 881
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 5 cut(s) 37, 40, 76, 132, 435
Bsh1236I CGCG 4 cut(s) 151, 275, 312, 710
BshFI GGCC 9 cut(s) 11, 116, 272, 316, 350, 491, 557, 622, 786
BshNI GGYRCC 2 cut(s) 136, 500
BsiHKCI CYCGRG 1 cut(s) 809
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 6 cut(s) 65, 117, 316, 574, 682, 815
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 748
BsnI GGCC 9 cut(s) 11, 116, 272, 316, 350, 491, 557, 622, 786
BsoBI CYCGRG 1 cut(s) 809
Bsp120I GGGCCC 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 624, 677
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 9 cut(s) 11, 116, 272, 316, 350, 491, 557, 622, 786
BspCNI CTCAG 3 cut(s) 119, 229, 961
BspFNI CGCG 4 cut(s) 151, 275, 312, 710
BspHI TCATGA 1 cut(s) 1038
BspLI GGNNCC 8 cut(s) 138, 158, 261, 502, 531, 621, 622, 674
BspT107I GGYRCC 2 cut(s) 136, 500
BsrFI RCCGGY 3 cut(s) 316, 350, 503
BsrI ACTGG 2 cut(s) 322, 972
BssAI RCCGGY 3 cut(s) 316, 350, 503
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 3 cut(s) 81, 137, 501
BssT1I CCWWGG 2 cut(s) 12, 766
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 3 cut(s) 81, 137, 501
BstC8I GCNNGC 9 cut(s) 102, 195, 314, 352, 505, 522, 784, 930, 1026
BstDEI CTNAG 3 cut(s) 106, 237, 948
BstDSI CCRYGG 3 cut(s) 149, 273, 310
BstENI CCTNNNNNAGG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 4 cut(s) 151, 275, 312, 710
BstH2I RGCGCY 4 cut(s) 140, 504, 510, 850
BstHHI GCGC 5 cut(s) 139, 385, 503, 509, 849
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 5 cut(s) 34, 101, 145, 213, 716
BstSCI CCNGG 4 cut(s) 116, 158, 207, 451
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 4 cut(s) 151, 275, 312, 710
BstV1I GCAGC 5 cut(s) 37, 40, 76, 132, 435
BsuRI GGCC 9 cut(s) 11, 116, 272, 316, 350, 491, 557, 622, 786
BtgI CCRYGG 3 cut(s) 149, 273, 310
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 329, 624
Cac8I GCNNGC 9 cut(s) 102, 195, 314, 352, 505, 522, 784, 930, 1026
CciI TCATGA 1 cut(s) 1038
CfoI GCGC 5 cut(s) 139, 385, 503, 509, 849
Cfr10I RCCGGY 3 cut(s) 316, 350, 503
Cfr13I GGNCC 6 cut(s) 156, 270, 314, 319, 620, 621
Cfr42I CCGCGG 3 cut(s) 152, 276, 313
CseI GACGC 3 cut(s) 70, 95, 750
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 7, 907, 1039
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 106, 237, 948
DinI GGCGCC 2 cut(s) 138, 502
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraIII CACNNNGTG 1 cut(s) 304
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 3 cut(s) 215, 272, 522
Eco130I CCWWGG 2 cut(s) 12, 766
Eco24I GRGCYC 2 cut(s) 624, 677
Eco47I GGWCC 2 cut(s) 156, 319
Eco47III AGCGCT 1 cut(s) 848
Eco57I CTGAAG 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 809
EcoNI CCTNNNNNAGG 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 12, 766
EcoT38I GRGCYC 2 cut(s) 624, 677
EgeI GGCGCC 2 cut(s) 138, 502
EheI GGCGCC 2 cut(s) 138, 502
ErhI CCWWGG 2 cut(s) 12, 766
FaeI CATG 3 cut(s) 10, 910, 1042
FaiI YATR 4 cut(s) 8, 482, 908, 1040
FaqI GGGAC 1 cut(s) 748
FatI CATG 3 cut(s) 6, 906, 1038
FauI CCCGC 4 cut(s) 88, 186, 212, 305
FblI GTMKAC 1 cut(s) 84
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 624, 677
GlaI GCGC 5 cut(s) 138, 384, 502, 508, 848
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 4 cut(s) 140, 504, 510, 850
HaeIII GGCC 9 cut(s) 11, 116, 272, 316, 350, 491, 557, 622, 786
HgaI GACGC 3 cut(s) 70, 95, 750
HhaI GCGC 5 cut(s) 139, 385, 503, 509, 849
Hin1I GRCGYC 3 cut(s) 81, 137, 501
Hin1II CATG 3 cut(s) 10, 910, 1042
Hin6I GCGC 5 cut(s) 137, 383, 501, 507, 847
HinP1I GCGC 5 cut(s) 137, 383, 501, 507, 847
HincII GTYRAC 2 cut(s) 64, 85
HindII GTYRAC 2 cut(s) 64, 85
HindIII AAGCTT 2 cut(s) 599, 1022
HinfI GANTC 8 cut(s) 43, 125, 169, 404, 662, 712, 889, 1044
HphI GGTGA 3 cut(s) 40, 316, 427
Hpy166II GTNNAC 5 cut(s) 64, 85, 156, 307, 475
Hpy188I TCNGA 8 cut(s) 238, 553, 582, 646, 672, 736, 951, 997
Hpy188III TCNNGA 3 cut(s) 809, 830, 1039
Hpy8I GTNNAC 5 cut(s) 64, 85, 156, 307, 475
Hpy99I CGWCG 4 cut(s) 86, 89, 286, 635
HpyAV CCTTC 3 cut(s) 385, 565, 810
HpyCH4V TGCA 4 cut(s) 291, 854, 886, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 101, 145, 213, 716
HpyF3I CTNAG 3 cut(s) 106, 237, 948
Hsp92I GRCGYC 3 cut(s) 81, 137, 501
Hsp92II CATG 3 cut(s) 10, 910, 1042
HspAI GCGC 5 cut(s) 137, 383, 501, 507, 847
KasI GGCGCC 2 cut(s) 136, 500
KroI GCCGGC 2 cut(s) 350, 503
KroNI GCCGGC 2 cut(s) 352, 505
KspI CCGCGG 3 cut(s) 152, 276, 313
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 7 cut(s) 259, 339, 514, 535, 672, 724, 976
Lsp1109I GCAGC 5 cut(s) 37, 40, 76, 132, 435
LweI GCATC 2 cut(s) 40, 1021
MaeIII GTNAC 1 cut(s) 514
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 343, 376
MhlI GDGCHC 2 cut(s) 624, 677
MluCI AATT 4 cut(s) 343, 804, 952, 1005
Mly113I GGCGCC 2 cut(s) 137, 501
MlyI GAGTC 4 cut(s) 52, 119, 413, 671
MmeI TCCRAC 1 cut(s) 650
MreI CGCCGGCG 1 cut(s) 503
MroNI GCCGGC 2 cut(s) 350, 503
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 3 cut(s) 360, 1004, 1017
MspA1I CMGCKG 4 cut(s) 151, 275, 312, 541
MspR9I CCNGG 4 cut(s) 118, 160, 209, 453
MvnI CGCG 4 cut(s) 151, 275, 312, 710
MwoI GCNNNNNNNGC 5 cut(s) 34, 101, 145, 213, 716
NaeI GCCGGC 2 cut(s) 352, 505
NarI GGCGCC 2 cut(s) 137, 501
NciI CCSGG 4 cut(s) 118, 160, 209, 453
NdeII GATC 1 cut(s) 366
NgoMIV GCCGGC 2 cut(s) 350, 503
NlaIII CATG 3 cut(s) 10, 910, 1042
NlaIV GGNNCC 8 cut(s) 138, 158, 261, 502, 531, 621, 622, 674
NmeAIII GCCGAG 3 cut(s) 136, 165, 583
PagI TCATGA 1 cut(s) 1038
PdiI GCCGGC 2 cut(s) 352, 505
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 4 cut(s) 169, 712, 889, 1044
PleI GAGTC 4 cut(s) 51, 119, 412, 670
PluTI GGCGCC 2 cut(s) 140, 504
PpsI GAGTC 4 cut(s) 51, 119, 412, 670
PspN4I GGNNCC 8 cut(s) 138, 158, 261, 502, 531, 621, 622, 674
PspOMI GGGCCC 1 cut(s) 620
PspPI GGNCC 6 cut(s) 156, 270, 314, 319, 620, 621
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacII CCGCGG 3 cut(s) 152, 276, 313
SalI GTCGAC 1 cut(s) 83
SaqAI TTAA 3 cut(s) 360, 1004, 1017
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 6 cut(s) 156, 270, 314, 319, 620, 621
SchI GAGTC 4 cut(s) 52, 119, 413, 671
ScrFI CCNGG 4 cut(s) 118, 160, 209, 453
SduI GDGCHC 2 cut(s) 624, 677
SfaNI GCATC 2 cut(s) 40, 1021
SfoI GGCGCC 2 cut(s) 138, 502
Sfr303I CCGCGG 3 cut(s) 152, 276, 313
SgrAI CRCCGGYG 1 cut(s) 503
SgrBI CCGCGG 3 cut(s) 152, 276, 313
SgrDI CGTCGACG 1 cut(s) 83
SinI GGWCC 2 cut(s) 156, 319
SmlI CTYRAG 1 cut(s) 828
SmoI CTYRAG 1 cut(s) 828
Sse9I AATT 4 cut(s) 343, 804, 952, 1005
SspDI GGCGCC 2 cut(s) 136, 500
StyD4I CCNGG 4 cut(s) 116, 158, 207, 451
StyI CCWWGG 2 cut(s) 12, 766
TaqI TCGA 2 cut(s) 21, 84
TaqII GACCGA 2 cut(s) 599, 849
TasI AATT 4 cut(s) 343, 804, 952, 1005
TauI GCSGC 9 cut(s) 95, 151, 200, 216, 219, 275, 538, 541, 782
TfiI GAWTC 4 cut(s) 169, 712, 889, 1044
Tru1I TTAA 3 cut(s) 360, 1004, 1017
Tru9I TTAA 3 cut(s) 360, 1004, 1017
TscAI CASTG 2 cut(s) 329, 631
TseI GCWGC 5 cut(s) 25, 28, 89, 145, 448
TspDTI ATGAA 1 cut(s) 1027
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 329, 631
VpaK11BI GGWCC 2 cut(s) 156, 319
XagI CCTNNNNNAGG 1 cut(s) 572
XapI RAATTY 1 cut(s) 952
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.