Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

24754736 .. 24754998

Gene Structure 263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCAGAATTCTCATTCGCAAATGGATAGGGAGCAGAGGAAAGAACATTCTGATAGCTTAATTGTTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCCGATAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

82

Amino Acids

9.58

Weight (kDa)

5.64

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	35
AluBI	AGCT	2 cut(s)	189, 211
AluI	AGCT	2 cut(s)	189, 211
Aor51HI	AGCGCT	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	37
BmsI	GCATC	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	117, 213
BstDEI	CTNAG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	117, 213
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	36
CviAII	CATG	2 cut(s)	94, 226
CviJI	RGCY	4 cut(s)	119, 134, 189, 211
CviKI_1	RGCY	4 cut(s)	119, 134, 189, 211
DdeI	CTNAG	1 cut(s)	135
Eco47III	AGCGCT	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	139
FaeI	CATG	2 cut(s)	97, 229
FaiI	YATR	2 cut(s)	95, 227
FatI	CATG	2 cut(s)	93, 225
GlaI	GCGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	37
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	97, 229
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	76, 231
Hpy188I	TCNGA	2 cut(s)	138, 184
Hpy188III	TCNNGA	2 cut(s)	17, 226
HpyCH4V	TGCA	3 cut(s)	41, 73, 215
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	97, 229
HspAI	GCGC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	101
LweI	GCATC	1 cut(s)	208
MluCI	AATT	2 cut(s)	139, 192
MnlI	CCTC	5 cut(s)	46, 49, 82, 124, 162
MseI	TTAA	2 cut(s)	191, 204
NlaIII	CATG	2 cut(s)	97, 229
PagI	TCATGA	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	76, 231
SaqAI	TTAA	2 cut(s)	191, 204
SetI	ASST	3 cut(s)	93, 191, 213
SfaNI	GCATC	1 cut(s)	208
SgeI	CNNG	6 cut(s)	29, 106, 128, 220, 224, 238
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	139, 192
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	139, 192
TfiI	GAWTC	2 cut(s)	76, 231
Tru1I	TTAA	2 cut(s)	191, 204
Tru9I	TTAA	2 cut(s)	191, 204
TspDTI	ATGAA	1 cut(s)	214
XapI	RAATTY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.