Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Reverse (-)

7737732 .. 7739800

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTCATGGCCTTGGAGCAGCAGGTGGTCCTGAGCCCCGTTGACGGCGACGCTAACGGCGCTGACGCCCGCCACCCCACGTCCGGTGACGACTCCAGCAAGGCGCCGAGGCTGCCACGCTGGACGCGGCAGGAGATTCTCGTGCTGATAAACGGTAAGCGGTACGCGGAGAGCCGGGGCGGGGGCCGGACTCCGAGGTCGGACTTCGGGTCGGGTCAGTCAGAGCCCAAATGGGCGGCGGTGTCGAACTACTGCAAGAAGCACGGGGTGAGCCGGGAGCCGGTCCAGTGCAGGAAGCGGTGGAGCAATTTGGCGGGGGACTTCAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCCTTTTGGGTGATGAGGAACGACCTAAGGAGAGAGAGGAAGCTGCCGGGGTTTTTCGATAAGGAGGTTTACGATATAATGGAGGCGGTTCCAGGTACTCCGACTACGCTGGCGTTACCGGGTCCGAACCGGGTGGAGTCCGAGGAGTTGAAGGAGGAGGGGATGGCGGAGGAGGCTGAGAACTTGTTCGATAGCATACAGAGACCGACTGAGGACGGGTTATTTTTGGATGACGAGTCCGGTCGGAGCCCCGAAAAGGAAGTCCGGTTCAAGGAGGGTCCGGTGATTTCAGCTCCCTTGCCAATATCAGAGAAGGTGTACAAACCAATGCCACAAGGACATCAAGGACAAGCAAGAACCTCAAGATCAATTTATTTGTGCAGCAGACCCAAAACACCCAGCTTCAATCCCAGAGTTTGGATCTACCTCTCAAGACCGGAAGCGGAAGCGTTTTGCAACAGAAGGAGAGGAGGAAGCATCCGATCTGCAGAATCAGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

291

Amino Acids

32.75

Weight (kDa)

8.6

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
AasI	GACNNNNNNGTC	1 cut(s)	196
Acc36I	ACCTGC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	786
AccII	CGCG	2 cut(s)	127, 167
AclWI	GGATC	1 cut(s)	797
AcyI	GRCGYC	2 cut(s)	66, 104
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	3 cut(s)	164, 466, 689
AfiI	CCNNNNNNNGG	7 cut(s)	44, 83, 181, 280, 625, 640, 786
AgsI	TTSAA	4 cut(s)	325, 520, 640, 775
AhdI	GACNNNNNGTC	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	3 cut(s)	412, 662, 771
AluI	AGCT	3 cut(s)	412, 662, 771
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	797
AoxI	GGCC	2 cut(s)	9, 184
ApeKI	GCWGC	4 cut(s)	19, 112, 412, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	3 cut(s)	62, 106, 349
AspS9I	GGNCC	5 cut(s)	28, 184, 283, 491, 647
AsuC2I	CCSGG	5 cut(s)	176, 275, 417, 489, 500
AsuHPI	GGTGA	4 cut(s)	98, 280, 391, 664
AvaII	GGWCC	4 cut(s)	28, 283, 491, 647
AxyI	CCTNAGG	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	3 cut(s)	38, 228, 620
BauI	CACGAG	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	31, 99, 399, 762
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	2 cut(s)	61, 73
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	5 cut(s)	176, 275, 417, 489, 500
BcoDI	GTCTC	1 cut(s)	565
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	2 cut(s)	63, 107
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	6 cut(s)	20, 113, 128, 237, 413, 751
BlsI	GCNGC	6 cut(s)	21, 114, 129, 238, 414, 752
Bme1390I	CCNGG	6 cut(s)	176, 275, 417, 462, 489, 500
Bme18I	GGWCC	4 cut(s)	28, 283, 491, 647
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	5 cut(s)	28, 184, 283, 491, 647
BmiI	GGNNCC	7 cut(s)	105, 185, 279, 459, 492, 617, 648
BmrFI	CCNGG	6 cut(s)	176, 275, 417, 462, 489, 500
BmsI	GCATC	1 cut(s)	855
BpmI	CTGGAG	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	715, 784
BpuMI	CCSGG	5 cut(s)	176, 275, 417, 489, 500
BsaHI	GRCGYC	2 cut(s)	66, 104
BsaI	GGTCTC	1 cut(s)	565
BsaJI	CCNNGG	6 cut(s)	12, 107, 175, 194, 416, 510
BsaWI	WCCGGW	5 cut(s)	83, 608, 633, 649, 805
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 83, 181, 280, 625, 640, 786
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	6 cut(s)	12, 107, 175, 194, 416, 510
BseGI	GGATG	3 cut(s)	537, 604, 846
BseLI	CCNNNNNNNGG	7 cut(s)	44, 83, 181, 280, 625, 640, 786
BseMII	CTCAG	3 cut(s)	23, 537, 570
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	4 cut(s)	527, 539, 554, 852
BseXI	GCAGC	4 cut(s)	31, 99, 399, 762
BseYI	CCCAGC	1 cut(s)	767
BsgI	GTGCAG	2 cut(s)	310, 769
Bsh1236I	CGCG	2 cut(s)	127, 167
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	11, 186
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	7 cut(s)	44, 83, 181, 280, 625, 640, 786
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	11, 186
Bso31I	GGTCTC	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	38, 228, 620
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	330, 734, 789, 851
BspANI	GGCC	2 cut(s)	11, 186
BspCNI	CTCAG	3 cut(s)	24, 538, 571
BspFNI	CGCG	2 cut(s)	127, 167
BspLI	GGNNCC	7 cut(s)	105, 185, 279, 459, 492, 617, 648
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	6 cut(s)	12, 107, 175, 194, 416, 510
BssMI	GATC	4 cut(s)	330, 734, 789, 851
BssNI	GRCGYC	2 cut(s)	66, 104
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	2 cut(s)	66, 104
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	70, 480
BstDEI	CTNAG	4 cut(s)	32, 395, 546, 579
BstF5I	GGATG	3 cut(s)	537, 604, 846
BstFNI	CGCG	2 cut(s)	127, 167
BstH2I	RGCGCY	2 cut(s)	63, 107
BstHHI	GCGC	3 cut(s)	62, 106, 349
BstKTI	GATC	4 cut(s)	333, 737, 792, 854
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	4 cut(s)	330, 734, 789, 851
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 112, 542
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	6 cut(s)	174, 273, 415, 460, 487, 498
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	2 cut(s)	127, 167
BstV1I	GCAGC	4 cut(s)	31, 99, 399, 762
BstX2I	RGATCY	1 cut(s)	789
BstYI	RGATCY	1 cut(s)	789
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	11, 186
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	537, 604, 846
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	13
Cac8I	GCNNGC	2 cut(s)	70, 480
CfoI	GCGC	3 cut(s)	62, 106, 349
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	5 cut(s)	28, 184, 283, 491, 647
CseI	GACGC	3 cut(s)	59, 74, 133
Csp6I	GTAC	3 cut(s)	163, 465, 688
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	3 cut(s)	163, 465, 688
DdeI	CTNAG	4 cut(s)	32, 395, 546, 579
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	4 cut(s)	332, 736, 791, 853
DpnII	GATC	4 cut(s)	330, 734, 789, 851
DraIII	CACNNNGTG	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	3 cut(s)	38, 228, 620
Eco31I	GGTCTC	1 cut(s)	565
Eco47I	GGWCC	4 cut(s)	28, 283, 491, 647
Eco81I	CCTNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	3 cut(s)	38, 228, 620
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 446, 566
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	6
FauI	CCCGC	3 cut(s)	77, 173, 307
Fnu4HI	GCNGC	6 cut(s)	20, 113, 128, 237, 413, 751
FokI	GGATG	3 cut(s)	544, 611, 833
FriOI	GRGCYC	3 cut(s)	38, 228, 620
Fsp4HI	GCNGC	6 cut(s)	20, 113, 128, 237, 413, 751
GlaI	GCGC	3 cut(s)	61, 105, 348
GluI	GCNGC	6 cut(s)	20, 113, 128, 237, 413, 751
GsaI	CCCAGC	1 cut(s)	771
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	2 cut(s)	63, 107
HaeIII	GGCC	2 cut(s)	11, 186
HgaI	GACGC	3 cut(s)	59, 74, 133
HhaI	GCGC	3 cut(s)	62, 106, 349
Hin1I	GRCGYC	2 cut(s)	66, 104
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	3 cut(s)	60, 104, 347
HinP1I	GCGC	3 cut(s)	60, 104, 347
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	7 cut(s)	92, 136, 190, 368, 506, 605, 860
HphI	GGTGA	4 cut(s)	98, 280, 391, 664
Hpy166II	GTNNAC	3 cut(s)	43, 439, 688
Hpy188I	TCNGA	9 cut(s)	195, 202, 223, 471, 495, 511, 615, 679, 851
Hpy188III	TCNNGA	4 cut(s)	31, 325, 732, 801
Hpy8I	GTNNAC	3 cut(s)	43, 439, 688
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	349, 514, 676, 825
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	255, 291, 750, 825, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 112, 542
HpyF3I	CTNAG	4 cut(s)	32, 395, 546, 579
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	2 cut(s)	66, 104
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	3 cut(s)	60, 104, 347
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	330, 734, 789, 851
LmnI	GCTCC	5 cut(s)	16, 277, 303, 615, 667
Lsp1109I	GCAGC	4 cut(s)	31, 99, 399, 762
LweI	GCATC	1 cut(s)	855
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	86, 483
MalI	GATC	4 cut(s)	332, 736, 791, 853
MboI	GATC	4 cut(s)	330, 734, 789, 851
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	789
MhlI	GDGCHC	3 cut(s)	38, 228, 620
MluCI	AATT	2 cut(s)	307, 738
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	5 cut(s)	86, 184, 377, 515, 614
MmeI	TCCRAC	3 cut(s)	180, 494, 593
MroXI	GAANNNNTTC	1 cut(s)	554
MspR9I	CCNGG	6 cut(s)	176, 275, 417, 462, 489, 500
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	2 cut(s)	127, 167
MwoI	GCNNNNNNNGC	3 cut(s)	59, 112, 542
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	5 cut(s)	176, 275, 417, 489, 500
NdeII	GATC	4 cut(s)	330, 734, 789, 851
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	7 cut(s)	105, 185, 279, 459, 492, 617, 648
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	136, 860
PflMI	CCANNNNNTGG	1 cut(s)	786
PkrI	GCNGC	6 cut(s)	21, 114, 129, 238, 414, 752
PleI	GAGTC	5 cut(s)	86, 184, 376, 514, 613
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	5 cut(s)	86, 184, 376, 514, 613
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	7 cut(s)	105, 185, 279, 459, 492, 617, 648
PspPI	GGNCC	5 cut(s)	28, 184, 283, 491, 647
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	789
RsaI	GTAC	3 cut(s)	164, 466, 689
RsaNI	GTAC	3 cut(s)	163, 465, 688
SatI	GCNGC	6 cut(s)	20, 113, 128, 237, 413, 751
Sau3AI	GATC	4 cut(s)	330, 734, 789, 851
Sau96I	GGNCC	5 cut(s)	28, 184, 283, 491, 647
SchI	GAGTC	5 cut(s)	86, 184, 377, 515, 614
ScrFI	CCNGG	6 cut(s)	176, 275, 417, 462, 489, 500
SduI	GDGCHC	3 cut(s)	38, 228, 620
SfaNI	GCATC	1 cut(s)	855
SfcI	CTRYAG	1 cut(s)	855
SfoI	GGCGCC	1 cut(s)	105
SinI	GGWCC	4 cut(s)	28, 283, 491, 647
SmlI	CTYRAG	2 cut(s)	730, 799
SmoI	CTYRAG	2 cut(s)	730, 799
Sse9I	AATT	2 cut(s)	307, 738
SspDI	GGCGCC	1 cut(s)	103
StyD4I	CCNGG	6 cut(s)	174, 273, 415, 460, 487, 498
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	245, 426, 558
TaqII	GACCGA	1 cut(s)	589
TasI	AATT	2 cut(s)	307, 738
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	2 cut(s)	130, 239
TfiI	GAWTC	2 cut(s)	136, 860
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	4 cut(s)	19, 112, 412, 750
Tsp45I	GTSAC	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	786
VpaK11BI	GGWCC	4 cut(s)	28, 283, 491, 647
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.