Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000816.1

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Reverse (-)

86448 .. 88940

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000816.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgagggaaatcaaggtccagaagctcgtcctcaacctctccgttcattcccaaaccctaactcattttcactcctcgtcttcctcctccgcctctgagctagccatcttgggcacctccattcccttcaactctctcaagctcgattgcgtcggagaatcccatgagggaaatcaaggtccagaagctcgtcctcaacctctccgtcggcgagagcggcgatcgtctcaccaaggccgccaaggtgcagcaggccaaaaacagccaccttcaattcccgagatgggttctacttctcaagaccgaaaaaggaagcgctttgcaatagatggagaggaggaaacattcagtttgcagaatcagttgattgaggtcatggaaaggaatggtaaaatgctggctgactattttgaggctcagaattctcattcgcaactggatagggagcagaggaaagaacattctgatagattaattgctgttcttaacaagcttgcagatgctttcatgagaatcgccgataagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

176

Amino Acids

19.88

Weight (kDa)

9.16

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	217
AciI	CCGC	3 cut(s)	90, 217, 238
AcsI	RAATTY	1 cut(s)	421
AfeI	AGCGCT	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	130, 273
AluBI	AGCT	5 cut(s)	25, 100, 142, 188, 493
AluI	AGCT	5 cut(s)	25, 100, 142, 188, 493
Alw26I	GTCTC	1 cut(s)	231
Ama87I	CYCGRG	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	317
AoxI	GGCC	2 cut(s)	235, 253
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	421
AseI	ATTAAT	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	16, 179
AsuHPI	GGTGA	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	16, 179
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	113, 277, 323
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	3 cut(s)	218, 238, 249
BlsI	GCNGC	3 cut(s)	219, 239, 250
Bme18I	GGWCC	2 cut(s)	16, 179
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	16, 179
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	2 cut(s)	122, 282
BsaJI	CCNNGG	2 cut(s)	232, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	232, 241
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	87, 431
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	3 cut(s)	64, 76, 350
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	237, 255
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	237, 255
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	3 cut(s)	90, 217, 238
BspANI	GGCC	2 cut(s)	237, 255
BspCNI	CTCAG	2 cut(s)	88, 430
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	232, 241
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	232, 241
BstC8I	GCNNGC	4 cut(s)	102, 253, 399, 495
BstDEI	CTNAG	2 cut(s)	96, 417
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	221
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	237, 255
Cac8I	GCNNGC	4 cut(s)	102, 253, 399, 495
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	16, 179
CseI	GACGC	1 cut(s)	139
CviAII	CATG	3 cut(s)	164, 376, 508
DdeI	CTNAG	2 cut(s)	96, 417
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	232, 241
Eco47I	GGWCC	2 cut(s)	16, 179
Eco47III	AGCGCT	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	232, 241
ErhI	CCWWGG	2 cut(s)	232, 241
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	3 cut(s)	167, 379, 511
FaiI	YATR	3 cut(s)	165, 377, 509
FatI	CATG	3 cut(s)	163, 375, 507
Fnu4HI	GCNGC	3 cut(s)	218, 238, 249
Fsp4HI	GCNGC	3 cut(s)	218, 238, 249
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	3 cut(s)	218, 238, 249
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	237, 255
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	167, 379, 511
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	3 cut(s)	158, 358, 513
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	97, 155, 420, 466
Hpy188III	TCNNGA	5 cut(s)	19, 182, 278, 299, 508
Hpy99I	CGWCG	2 cut(s)	155, 210
HpyAV	CCTTC	2 cut(s)	136, 279
HpyCH4V	TGCA	4 cut(s)	248, 323, 355, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	96, 417
Hsp92II	CATG	3 cut(s)	167, 379, 511
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	5 cut(s)	32, 195, 237, 383, 422
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	101
MalI	GATC	1 cut(s)	223
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	3 cut(s)	273, 421, 474
MmeI	TCCRAC	1 cut(s)	133
MseI	TTAA	2 cut(s)	473, 486
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	221
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	167, 379, 511
NlaIV	GGNNCC	1 cut(s)	115
PagI	TCATGA	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	158, 358, 513
PkrI	GCNGC	3 cut(s)	219, 239, 250
Ple19I	CGATCG	1 cut(s)	224
PshBI	ATTAAT	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	16, 179
PvuI	CGATCG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	473, 486
SatI	GCNGC	3 cut(s)	218, 238, 249
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	2 cut(s)	16, 179
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	2 cut(s)	16, 179
SmlI	CTYRAG	2 cut(s)	137, 297
SmoI	CTYRAG	2 cut(s)	137, 297
Sse9I	AATT	3 cut(s)	273, 421, 474
SsiI	CCGC	3 cut(s)	90, 217, 238
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	232, 241
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	273, 421, 474
TauI	GCSGC	2 cut(s)	220, 240
TfiI	GAWTC	3 cut(s)	158, 358, 513
Tru1I	TTAA	2 cut(s)	473, 486
Tru9I	TTAA	2 cut(s)	473, 486
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	35, 496
TspGWI	ACGGA	2 cut(s)	31, 194
VpaK11BI	GGWCC	2 cut(s)	16, 179
VspI	ATTAAT	1 cut(s)	473
XapI	RAATTY	1 cut(s)	421
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.