Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001700.1

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

104253 .. 105812

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001700.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgagggaaatcaaggtccagaagctagtcctcaacatctccgtcggcgagagcggcgatcgtctcaccaaggccgccaagaatgaaaaaccccctattaatctcagtctcagattctctatacgactagtctgcaaattcccttcacatgtagagtctcttggtctactcatggtaaatcaaggtgcagcaggccaaaaacagccaccttcaattcccgagatgggttctacttctcaagaccgaaaaaggaagcgctttgcaatagatggagaggaggaaacattcagtttgcagaatcagttgattgaggtcatggaaaggaatggtaaaatgctggctgactattttgaggctcagaattctcattcgcaactggatagggagcagaggaaagaacattctgatagcttaattgctgttcttaacaagcttgcagatgctttcatgagaatcgccgataagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

156

Amino Acids

17.62

Weight (kDa)

9.07

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	2 cut(s)	54, 75
AcsI	RAATTY	2 cut(s)	137, 361
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	213
AhlI	ACTAGT	1 cut(s)	127
AluBI	AGCT	3 cut(s)	25, 411, 433
AluI	AGCT	3 cut(s)	25, 411, 433
Alw26I	GTCTC	3 cut(s)	68, 113, 162
Ama87I	CYCGRG	1 cut(s)	218
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	2 cut(s)	72, 193
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	137, 361
AseI	ATTAAT	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	217, 263
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BcoDI	GTCTC	3 cut(s)	68, 113, 162
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	26, 128
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	3 cut(s)	55, 75, 189
BlsI	GCNGC	3 cut(s)	56, 76, 190
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	3 cut(s)	118, 124, 371
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 195
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	68, 113, 162
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	74, 195
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	2 cut(s)	74, 195
BspCNI	CTCAG	3 cut(s)	117, 123, 370
BspHI	TCATGA	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	193, 339, 435
BstDEI	CTNAG	3 cut(s)	104, 110, 357
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	3 cut(s)	68, 113, 162
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	74, 195
Cac8I	GCNNGC	3 cut(s)	193, 339, 435
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	4 cut(s)	149, 172, 316, 448
CviJI	RGCY	8 cut(s)	25, 74, 195, 205, 341, 356, 411, 433
CviKI_1	RGCY	8 cut(s)	25, 74, 195, 205, 341, 356, 411, 433
DdeI	CTNAG	3 cut(s)	104, 110, 357
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	152, 175, 319, 451
FaiI	YATR	5 cut(s)	122, 150, 173, 317, 449
FatI	CATG	4 cut(s)	148, 171, 315, 447
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	55, 75, 189
Fsp4HI	GCNGC	3 cut(s)	55, 75, 189
FspBI	CTAG	2 cut(s)	26, 128
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	55, 75, 189
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	74, 195
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	152, 175, 319, 451
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	114, 155, 298, 453
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	113, 360, 406
Hpy188III	TCNNGA	4 cut(s)	19, 218, 239, 448
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	153, 219
HpyCH4V	TGCA	5 cut(s)	135, 188, 263, 295, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	3 cut(s)	104, 110, 357
Hsp92II	CATG	4 cut(s)	152, 175, 319, 451
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	4 cut(s)	32, 177, 323, 362
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	26, 128
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	58
MluCI	AATT	4 cut(s)	137, 213, 361, 414
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	6 cut(s)	41, 268, 271, 304, 346, 384
MseI	TTAA	3 cut(s)	99, 413, 426
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	152, 175, 319, 451
NspI	RCATGY	1 cut(s)	152
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	114, 298, 453
PkrI	GCNGC	3 cut(s)	56, 76, 190
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PscI	ACATGT	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	99, 413, 426
SatI	GCNGC	3 cut(s)	55, 75, 189
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	164
SetI	ASST	7 cut(s)	18, 27, 187, 211, 315, 413, 435
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	4 cut(s)	137, 213, 361, 414
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	2 cut(s)	26, 128
StyI	CCWWGG	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	137, 213, 361, 414
TauI	GCSGC	2 cut(s)	57, 77
TfiI	GAWTC	3 cut(s)	114, 298, 453
Tru1I	TTAA	3 cut(s)	99, 413, 426
Tru9I	TTAA	3 cut(s)	99, 413, 426
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	99, 436
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	2 cut(s)	137, 361
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	26, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.