Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

57071147 .. 57071492

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG309100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGGAACGATTTGAGGAGGGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCCGGCGCCGCCGCCGCCGCTCCGGTTACGCTGGCTCTGGCTCCGCCGCCGCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGACGAGGTGGAGAAGCTTTTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGACGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCTTTGCCAATATCAGGTGATTCACACTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

114

Amino Acids

12.49

Weight (kDa)

4.49

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	299
AciI	CCGC	8 cut(s)	87, 90, 93, 96, 122, 125, 128, 297
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	163, 271, 323
AluBI	AGCT	3 cut(s)	31, 190, 308
AluI	AGCT	3 cut(s)	31, 190, 308
AoxI	GGCC	3 cut(s)	72, 144, 209
ApaI	GGGCCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	209, 210
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	213, 266
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	59
BcnI	CCSGG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	7 cut(s)	32, 87, 90, 93, 96, 125, 128
BlsI	GCNGC	7 cut(s)	33, 88, 91, 94, 97, 126, 129
Bme1390I	CCNGG	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	209, 210
BmiI	GGNNCC	5 cut(s)	85, 120, 210, 211, 263
BmrFI	CCNGG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 271, 323
BseDI	CCNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	163, 271, 323
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	74, 146, 211
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	4 cut(s)	35, 81, 101, 280
BslI	CCNNNNNNNGG	3 cut(s)	163, 271, 323
BsnI	GGCC	3 cut(s)	74, 146, 211
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	213, 266
BspACI	CCGC	8 cut(s)	87, 90, 93, 96, 122, 125, 128, 297
BspANI	GGCC	3 cut(s)	74, 146, 211
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	5 cut(s)	85, 120, 210, 211, 263
BspT107I	GGYRCC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 95, 305
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	74, 146, 211
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	209, 210
DinI	GGCGCC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	111
Eco24I	GRGCYC	2 cut(s)	213, 266
Eco57I	CTGAAG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	209
EcoT38I	GRGCYC	2 cut(s)	213, 266
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
FaiI	YATR	2 cut(s)	60, 65
Fnu4HI	GCNGC	7 cut(s)	32, 87, 90, 93, 96, 125, 128
FriOI	GRGCYC	2 cut(s)	213, 266
Fsp4HI	GCNGC	7 cut(s)	32, 87, 90, 93, 96, 125, 128
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	7 cut(s)	32, 87, 90, 93, 96, 125, 128
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	74, 146, 211
HapII	CCGG	4 cut(s)	35, 81, 101, 280
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	251, 301, 329
HpaII	CCGG	4 cut(s)	35, 81, 101, 280
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	4 cut(s)	142, 171, 235, 261
Hpy99I	CGWCG	2 cut(s)	179, 224
HpyAV	CCTTC	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 95, 305
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
LmnI	GCTCC	4 cut(s)	103, 124, 261, 313
Lsp1109I	GCAGC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	103
MbiI	CCGCTC	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	213, 266
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	9, 12, 46, 64, 136, 157, 172
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	4 cut(s)	35, 81, 101, 280
MspR9I	CCNGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	92, 95, 305
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	36
NlaIV	GGNNCC	5 cut(s)	85, 120, 210, 211, 263
NmeAIII	GCCGAG	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	301, 329
PkrI	GCNGC	7 cut(s)	33, 88, 91, 94, 97, 126, 129
PleI	GAGTC	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	259
PspN4I	GGNNCC	5 cut(s)	85, 120, 210, 211, 263
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	209, 210
SatI	GCNGC	7 cut(s)	32, 87, 90, 93, 96, 125, 128
Sau96I	GGNCC	2 cut(s)	209, 210
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	2 cut(s)	213, 266
SetI	ASST	7 cut(s)	33, 57, 159, 183, 192, 310, 328
SfoI	GGCGCC	1 cut(s)	85
SsiI	CCGC	8 cut(s)	87, 90, 93, 96, 122, 125, 128, 297
SspDI	GGCGCC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	34
TaqII	GACCGA	1 cut(s)	188
TauI	GCSGC	6 cut(s)	89, 92, 95, 98, 127, 130
TfiI	GAWTC	2 cut(s)	301, 329
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.