Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

46514902 .. 46519194

Gene Structure 4293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCTTGGAGTTCGAGCAGCAGCAGTTGAGTCTCACCACCAACCCCGTTGACGGCGACACTAACGGCGTCGACGCCGCGGCGGGGCGAGCCTCAGCCGAGGCCGGGGATGACGCCAGCAAGGCGCCGAGGCTGCCGCGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGGAAGAGGGCGGCGGAGAGCCGGGGCGGCGGGGGGAGGACGGCGAGGTCGGAGTTGGGGTCGGGTCAGGCCGAGCCGAAATGGGCCGCGGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGAGGAGAGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCCGGCGCCGGCGCTCCGGTTACGCTGGCTCTGGCTCCGCCGCCGCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGATGAGGTGGAGAAGCTTTTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGAGGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCTTTGCCAATATCAGGTAATTCACACTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

247

Amino Acids

27.16

Weight (kDa)

5.51

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	47 - 137	4.4e-11	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AccB1I	GGYRCC	2 cut(s)	124, 488
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	5 cut(s)	80, 139, 263, 300, 698
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
AdeI	CACNNNGTG	1 cut(s)	292
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	7 cut(s)	53, 84, 105, 304, 562, 670, 722
AluBI	AGCT	3 cut(s)	436, 589, 707
AluI	AGCT	3 cut(s)	436, 589, 707
Alw26I	GTCTC	1 cut(s)	38
AoxI	GGCC	9 cut(s)	3, 102, 243, 258, 302, 336, 477, 543, 608
ApaI	GGGCCC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	19, 22, 133, 436
AspLEI	GCGC	4 cut(s)	127, 373, 491, 497
AspS9I	GGNCC	6 cut(s)	144, 258, 302, 307, 608, 609
AsuC2I	CCSGG	4 cut(s)	106, 148, 197, 441
AsuHPI	GGTGA	3 cut(s)	28, 304, 415
AvaII	GGWCC	2 cut(s)	144, 307
BaeGI	GKGCMC	1 cut(s)	612
BanI	GGYRCC	2 cut(s)	124, 488
BanII	GRGCYC	2 cut(s)	612, 665
BbvCI	CCTCAGC	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	31, 34, 120, 423
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	4 cut(s)	70, 82, 231, 464
BcnI	CCSGG	4 cut(s)	106, 148, 197, 441
BcoDI	GTCTC	1 cut(s)	38
BfoI	RGCGCY	3 cut(s)	128, 492, 498
BglI	GCCNNNNNGGC	2 cut(s)	122, 201
Bme1390I	CCNGG	4 cut(s)	106, 148, 197, 441
Bme18I	GGWCC	2 cut(s)	144, 307
BmgT120I	GGNCC	6 cut(s)	144, 258, 302, 307, 608, 609
BmiI	GGNNCC	7 cut(s)	126, 146, 490, 519, 609, 610, 662
BmrFI	CCNGG	4 cut(s)	106, 148, 197, 441
Bpu10I	CCTNAGC	1 cut(s)	94
BpuMI	CCSGG	4 cut(s)	106, 148, 197, 441
BsaHI	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
BsaWI	WCCGGW	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	7 cut(s)	53, 84, 105, 304, 562, 670, 722
Bse118I	RCCGGY	3 cut(s)	304, 338, 491
Bse1I	ACTGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	7 cut(s)	53, 84, 105, 304, 562, 670, 722
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	436, 662
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	31, 34, 120, 423
Bsh1236I	CGCG	5 cut(s)	80, 139, 263, 300, 698
BshFI	GGCC	9 cut(s)	5, 104, 245, 260, 304, 338, 479, 545, 610
BshNI	GGYRCC	2 cut(s)	124, 488
BslI	CCNNNNNNNGG	7 cut(s)	53, 84, 105, 304, 562, 670, 722
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	9 cut(s)	5, 104, 245, 260, 304, 338, 479, 545, 610
Bsp120I	GGGCCC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	612, 665
Bsp143I	GATC	1 cut(s)	354
BspANI	GGCC	9 cut(s)	5, 104, 245, 260, 304, 338, 479, 545, 610
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	5 cut(s)	80, 139, 263, 300, 698
BspLI	GGNNCC	7 cut(s)	126, 146, 490, 519, 609, 610, 662
BspT107I	GGYRCC	2 cut(s)	124, 488
BsrFI	RCCGGY	3 cut(s)	304, 338, 491
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	3 cut(s)	304, 338, 491
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
BssT1I	CCWWGG	1 cut(s)	6
Bst6I	CTCTTC	2 cut(s)	173, 314
BstACI	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
BstC8I	GCNNGC	6 cut(s)	90, 118, 302, 340, 493, 510
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	4 cut(s)	78, 137, 261, 298
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	5 cut(s)	80, 139, 263, 300, 698
BstH2I	RGCGCY	3 cut(s)	128, 492, 498
BstHHI	GCGC	4 cut(s)	127, 373, 491, 497
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 122, 133, 201, 704
BstSCI	CCNGG	4 cut(s)	104, 146, 195, 439
BstSLI	GKGCMC	1 cut(s)	612
BstUI	CGCG	5 cut(s)	80, 139, 263, 300, 698
BstV1I	GCAGC	4 cut(s)	31, 34, 120, 423
BsuRI	GGCC	9 cut(s)	5, 104, 245, 260, 304, 338, 479, 545, 610
BtgI	CCRYGG	4 cut(s)	78, 137, 261, 298
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	317, 612
Cac8I	GCNNGC	6 cut(s)	90, 118, 302, 340, 493, 510
CfoI	GCGC	4 cut(s)	127, 373, 491, 497
Cfr10I	RCCGGY	3 cut(s)	304, 338, 491
Cfr13I	GGNCC	6 cut(s)	144, 258, 302, 307, 608, 609
Cfr42I	CCGCGG	4 cut(s)	81, 140, 264, 301
CseI	GACGC	3 cut(s)	58, 83, 122
Csp6I	GTAC	1 cut(s)	274
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	94
DinI	GGCGCC	2 cut(s)	126, 490
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	173, 314
EarI	CTCTTC	2 cut(s)	173, 314
EciI	GGCGGA	2 cut(s)	203, 510
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	612, 665
Eco47I	GGWCC	2 cut(s)	144, 307
Eco57I	CTGAAG	1 cut(s)	578
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	608
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	612, 665
EgeI	GGCGCC	2 cut(s)	126, 490
EheI	GGCGCC	2 cut(s)	126, 490
ErhI	CCWWGG	1 cut(s)	6
FaiI	YATR	2 cut(s)	465, 470
FauI	CCCGC	3 cut(s)	76, 197, 293
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	2 cut(s)	612, 665
GlaI	GCGC	4 cut(s)	126, 372, 490, 496
HaeII	RGCGCY	3 cut(s)	128, 492, 498
HaeIII	GGCC	9 cut(s)	5, 104, 245, 260, 304, 338, 479, 545, 610
HgaI	GACGC	3 cut(s)	58, 83, 122
HhaI	GCGC	4 cut(s)	127, 373, 491, 497
Hin1I	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
Hin6I	GCGC	4 cut(s)	125, 371, 489, 495
HinP1I	GCGC	4 cut(s)	125, 371, 489, 495
HincII	GTYRAC	2 cut(s)	52, 73
HindII	GTYRAC	2 cut(s)	52, 73
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	5 cut(s)	31, 157, 392, 650, 700
HphI	GGTGA	3 cut(s)	28, 304, 415
Hpy166II	GTNNAC	4 cut(s)	52, 73, 144, 295
Hpy188I	TCNGA	5 cut(s)	226, 541, 570, 634, 660
Hpy8I	GTNNAC	4 cut(s)	52, 73, 144, 295
Hpy99I	CGWCG	4 cut(s)	74, 77, 274, 623
HpyAV	CCTTC	2 cut(s)	373, 553
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 122, 133, 201, 704
HpyF3I	CTNAG	1 cut(s)	94
Hsp92I	GRCGYC	5 cut(s)	69, 75, 114, 125, 489
HspAI	GCGC	4 cut(s)	125, 371, 489, 495
KasI	GGCGCC	2 cut(s)	124, 488
KroI	GCCGGC	2 cut(s)	338, 491
KroNI	GCCGGC	2 cut(s)	340, 493
KspI	CCGCGG	4 cut(s)	81, 140, 264, 301
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	5 cut(s)	327, 502, 523, 660, 712
Lsp1109I	GCAGC	4 cut(s)	31, 34, 120, 423
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	190, 331, 364
MhlI	GDGCHC	2 cut(s)	612, 665
MluCI	AATT	2 cut(s)	331, 727
Mly113I	GGCGCC	2 cut(s)	125, 489
MlyI	GAGTC	3 cut(s)	40, 401, 659
MmeI	TCCRAC	2 cut(s)	204, 638
MreI	CGCCGGCG	1 cut(s)	491
MroNI	GCCGGC	2 cut(s)	338, 491
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	5 cut(s)	80, 139, 263, 300, 529
MspR9I	CCNGG	4 cut(s)	106, 148, 197, 441
MvnI	CGCG	5 cut(s)	80, 139, 263, 300, 698
MwoI	GCNNNNNNNGC	5 cut(s)	89, 122, 133, 201, 704
NaeI	GCCGGC	2 cut(s)	340, 493
NarI	GGCGCC	2 cut(s)	125, 489
NciI	CCSGG	4 cut(s)	106, 148, 197, 441
NdeII	GATC	1 cut(s)	354
NgoMIV	GCCGGC	2 cut(s)	338, 491
NlaIV	GGNNCC	7 cut(s)	126, 146, 490, 519, 609, 610, 662
NmeAIII	GCCGAG	4 cut(s)	124, 153, 271, 571
PdiI	GCCGGC	2 cut(s)	340, 493
PfeI	GAWTC	2 cut(s)	157, 700
PleI	GAGTC	3 cut(s)	39, 400, 658
PluTI	GGCGCC	2 cut(s)	128, 492
PpsI	GAGTC	3 cut(s)	39, 400, 658
PspN4I	GGNNCC	7 cut(s)	126, 146, 490, 519, 609, 610, 662
PspOMI	GGGCCC	1 cut(s)	608
PspPI	GGNCC	6 cut(s)	144, 258, 302, 307, 608, 609
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacII	CCGCGG	4 cut(s)	81, 140, 264, 301
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	6 cut(s)	144, 258, 302, 307, 608, 609
SchI	GAGTC	3 cut(s)	40, 401, 659
ScrFI	CCNGG	4 cut(s)	106, 148, 197, 441
SduI	GDGCHC	2 cut(s)	612, 665
SetI	ASST	9 cut(s)	224, 326, 438, 462, 558, 582, 591, 709, 727
SfoI	GGCGCC	2 cut(s)	126, 490
Sfr303I	CCGCGG	4 cut(s)	81, 140, 264, 301
SgrAI	CRCCGGYG	1 cut(s)	491
SgrBI	CCGCGG	4 cut(s)	81, 140, 264, 301
SgrDI	CGTCGACG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	144, 307
Sse9I	AATT	2 cut(s)	331, 727
SspDI	GGCGCC	2 cut(s)	124, 488
StyD4I	CCNGG	4 cut(s)	104, 146, 195, 439
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	2 cut(s)	15, 72
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	2 cut(s)	331, 727
TauI	GCSGC	8 cut(s)	80, 83, 139, 188, 204, 263, 526, 529
TfiI	GAWTC	2 cut(s)	157, 700
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	317, 619
TseI	GCWGC	4 cut(s)	19, 22, 133, 436
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	2 cut(s)	317, 619
VpaK11BI	GGWCC	2 cut(s)	144, 307
XagI	CCTNNNNNAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.