Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

52305243 .. 52308092

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTCATGGCCTTGGAGTTCGAGCAGCAGCAGCAGCAGCAGTTGAGTCTCACCACCAACCCCGCTGACGGCGACACTAACGGCGTCGACGCCGCGGCGGGCCGAGCCTCAGCCGAGGCCGGGGATGACGCCAGCAAGGCGCCGAGGCTGCCGCGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGGAAGAGGGCGGCGGAGAGCCGGGGCGGCGGGGGGGAGGACGGCGAGGTCCGAGTTCGGGTCGGGTCAGGCCGAGCCGAAATGGGCCGCGGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGAGGAGAGAGAGAAAGCTGCCGGGTTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCCGGCGCCGCCGCTCCGGTCACGCTGGCTCTGGCTCCGCCGCCTCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGATGAGGTGGAGAAGCTTTTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGAGGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCCTTGCCAATATCAGGTGCAGCAGGCCAGAAACAGCCACCTTCGATTCCCGAGATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCAGAATTCTCATTCGCATCTGGATAGGGAGCAGAGGAAACAACATTCTGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCAGATAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

341

Amino Acids

37.74

Weight (kDa)

5.1

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB1I	GGYRCC	2 cut(s)	139, 503
AccBSI	CCGCTC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	5 cut(s)	95, 154, 279, 316, 713
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	812
AfiI	CCNNNNNNNGG	8 cut(s)	68, 120, 247, 320, 577, 685, 737, 779
AluBI	AGCT	5 cut(s)	451, 604, 722, 966, 988
AluI	AGCT	5 cut(s)	451, 604, 722, 966, 988
Alw26I	GTCTC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	773
Aor51HI	AGCGCT	1 cut(s)	812
ApaI	GGGCCC	1 cut(s)	627
ApeKI	GCWGC	8 cut(s)	25, 28, 31, 34, 37, 148, 451, 743
ApoI	RAATTY	1 cut(s)	916
AspLEI	GCGC	4 cut(s)	142, 388, 506, 813
AspS9I	GGNCC	8 cut(s)	100, 159, 238, 274, 318, 323, 623, 624
AsuC2I	CCSGG	4 cut(s)	121, 163, 212, 456
AsuHPI	GGTGA	3 cut(s)	43, 320, 430
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	3 cut(s)	159, 238, 323
BaeGI	GKGCMC	1 cut(s)	627
BanI	GGYRCC	2 cut(s)	139, 503
BanII	GRGCYC	2 cut(s)	627, 680
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	8 cut(s)	37, 40, 43, 46, 49, 135, 438, 755
BccI	CCATC	3 cut(s)	541, 772, 818
BceAI	ACGGC	4 cut(s)	85, 97, 247, 479
BcnI	CCSGG	4 cut(s)	121, 163, 212, 456
BcoDI	GTCTC	1 cut(s)	53
BfoI	RGCGCY	3 cut(s)	143, 507, 814
BglI	GCCNNNNNGGC	2 cut(s)	137, 216
Bme1390I	CCNGG	4 cut(s)	121, 163, 212, 456
Bme18I	GGWCC	3 cut(s)	159, 238, 323
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	8 cut(s)	100, 159, 238, 274, 318, 323, 623, 624
BmiI	GGNNCC	7 cut(s)	141, 161, 505, 534, 624, 625, 677
BmrFI	CCNGG	4 cut(s)	121, 163, 212, 456
BmsI	GCATC	2 cut(s)	937, 985
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	777
BpuMI	CCSGG	4 cut(s)	121, 163, 212, 456
BsaHI	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
BsaJI	CCNNGG	9 cut(s)	12, 93, 114, 120, 143, 152, 211, 277, 314
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	8 cut(s)	68, 120, 247, 320, 577, 685, 737, 779
Bse118I	RCCGGY	2 cut(s)	320, 353
Bse1I	ACTGG	1 cut(s)	326
BseDI	CCNNGG	9 cut(s)	12, 93, 114, 120, 143, 152, 211, 277, 314
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	8 cut(s)	68, 120, 247, 320, 577, 685, 737, 779
BseMII	CTCAG	2 cut(s)	123, 926
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	451, 677, 845
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	8 cut(s)	37, 40, 43, 46, 49, 135, 438, 755
BsgI	GTGCAG	1 cut(s)	762
Bsh1236I	CGCG	5 cut(s)	95, 154, 279, 316, 713
BshNI	GGYRCC	2 cut(s)	139, 503
BsiHKCI	CYCGRG	1 cut(s)	773
BslI	CCNNNNNNNGG	8 cut(s)	68, 120, 247, 320, 577, 685, 737, 779
BsmAI	GTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	773
Bsp120I	GGGCCC	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	627, 680
Bsp143I	GATC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	122, 925
BspFNI	CGCG	5 cut(s)	95, 154, 279, 316, 713
BspHI	TCATGA	1 cut(s)	1002
BspLI	GGNNCC	7 cut(s)	141, 161, 505, 534, 624, 625, 677
BspT107I	GGYRCC	2 cut(s)	139, 503
BsrBI	CCGCTC	1 cut(s)	512
BsrFI	RCCGGY	2 cut(s)	320, 353
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	2 cut(s)	320, 353
BssECI	CCNNGG	9 cut(s)	12, 93, 114, 120, 143, 152, 211, 277, 314
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
BstC8I	GCNNGC	8 cut(s)	100, 133, 318, 355, 525, 748, 894, 990
BstDEI	CTNAG	2 cut(s)	109, 912
BstDSI	CCRYGG	4 cut(s)	93, 152, 277, 314
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	5 cut(s)	95, 154, 279, 316, 713
BstH2I	RGCGCY	3 cut(s)	143, 507, 814
BstHHI	GCGC	4 cut(s)	142, 388, 506, 813
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 34, 37, 104, 137, 148, 216, 719
BstSCI	CCNGG	4 cut(s)	119, 161, 210, 454
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	5 cut(s)	95, 154, 279, 316, 713
BstV1I	GCAGC	8 cut(s)	37, 40, 43, 46, 49, 135, 438, 755
BtgI	CCRYGG	4 cut(s)	93, 152, 277, 314
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	333, 627
Cac8I	GCNNGC	8 cut(s)	100, 133, 318, 355, 525, 748, 894, 990
CciI	TCATGA	1 cut(s)	1002
CfoI	GCGC	4 cut(s)	142, 388, 506, 813
Cfr10I	RCCGGY	2 cut(s)	320, 353
Cfr13I	GGNCC	8 cut(s)	100, 159, 238, 274, 318, 323, 623, 624
Cfr42I	CCGCGG	4 cut(s)	96, 155, 280, 317
CseI	GACGC	3 cut(s)	73, 98, 137
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	3 cut(s)	7, 871, 1003
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	2 cut(s)	109, 912
DinI	GGCGCC	2 cut(s)	141, 505
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraIII	CACNNNGTG	1 cut(s)	308
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	2 cut(s)	218, 525
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	627, 680
Eco47I	GGWCC	3 cut(s)	159, 238, 323
Eco47III	AGCGCT	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	773
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	627, 680
EgeI	GGCGCC	2 cut(s)	141, 505
EheI	GGCGCC	2 cut(s)	141, 505
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	10, 874, 1006
FaiI	YATR	5 cut(s)	8, 480, 485, 872, 1004
FatI	CATG	3 cut(s)	6, 870, 1002
FauI	CCCGC	4 cut(s)	70, 91, 212, 309
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	627, 680
GlaI	GCGC	4 cut(s)	141, 387, 505, 812
HaeII	RGCGCY	3 cut(s)	143, 507, 814
HgaI	GACGC	3 cut(s)	73, 98, 137
HhaI	GCGC	4 cut(s)	142, 388, 506, 813
Hin1I	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
Hin1II	CATG	3 cut(s)	10, 874, 1006
Hin6I	GCGC	4 cut(s)	140, 386, 504, 811
HinP1I	GCGC	4 cut(s)	140, 386, 504, 811
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	602, 986
HinfI	GANTC	8 cut(s)	46, 172, 407, 665, 715, 769, 853, 1008
HphI	GGTGA	3 cut(s)	43, 320, 430
Hpy166II	GTNNAC	3 cut(s)	88, 159, 311
Hpy188I	TCNGA	8 cut(s)	242, 546, 556, 585, 649, 675, 915, 961
Hpy188III	TCNNGA	4 cut(s)	773, 794, 932, 1003
Hpy8I	GTNNAC	3 cut(s)	88, 159, 311
Hpy99I	CGWCG	4 cut(s)	89, 92, 290, 638
HpyAV	CCTTC	3 cut(s)	388, 568, 774
HpyCH4V	TGCA	5 cut(s)	295, 743, 818, 850, 992
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 34, 37, 104, 137, 148, 216, 719
HpyF3I	CTNAG	2 cut(s)	109, 912
Hsp92I	GRCGYC	5 cut(s)	84, 90, 129, 140, 504
Hsp92II	CATG	3 cut(s)	10, 874, 1006
HspAI	GCGC	4 cut(s)	140, 386, 504, 811
KasI	GGCGCC	2 cut(s)	139, 503
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	4 cut(s)	96, 155, 280, 317
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	6 cut(s)	342, 517, 538, 675, 727, 940
Lsp1109I	GCAGC	8 cut(s)	37, 40, 43, 46, 49, 135, 438, 755
LweI	GCATC	2 cut(s)	937, 985
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	371
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	205, 379
MhlI	GDGCHC	2 cut(s)	627, 680
MluCI	AATT	3 cut(s)	346, 916, 969
Mly113I	GGCGCC	2 cut(s)	140, 504
MlyI	GAGTC	3 cut(s)	55, 416, 674
MmeI	TCCRAC	1 cut(s)	653
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	3 cut(s)	363, 968, 981
MspA1I	CMGCKG	5 cut(s)	65, 95, 154, 279, 316
MspR9I	CCNGG	4 cut(s)	121, 163, 212, 456
MvnI	CGCG	5 cut(s)	95, 154, 279, 316, 713
MwoI	GCNNNNNNNGC	8 cut(s)	31, 34, 37, 104, 137, 148, 216, 719
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	2 cut(s)	140, 504
NciI	CCSGG	4 cut(s)	121, 163, 212, 456
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	10, 874, 1006
NlaIV	GGNNCC	7 cut(s)	141, 161, 505, 534, 624, 625, 677
NmeAIII	GCCGAG	5 cut(s)	128, 139, 168, 287, 586
NmuCI	GTSAC	1 cut(s)	517
PagI	TCATGA	1 cut(s)	1002
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	172, 715, 769, 853, 1008
PleI	GAGTC	3 cut(s)	54, 415, 673
PluTI	GGCGCC	2 cut(s)	143, 507
PpsI	GAGTC	3 cut(s)	54, 415, 673
PspN4I	GGNNCC	7 cut(s)	141, 161, 505, 534, 624, 625, 677
PspOMI	GGGCCC	1 cut(s)	623
PspPI	GGNCC	8 cut(s)	100, 159, 238, 274, 318, 323, 623, 624
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SacII	CCGCGG	4 cut(s)	96, 155, 280, 317
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	363, 968, 981
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	8 cut(s)	100, 159, 238, 274, 318, 323, 623, 624
SchI	GAGTC	3 cut(s)	55, 416, 674
ScrFI	CCNGG	4 cut(s)	121, 163, 212, 456
SduI	GDGCHC	2 cut(s)	627, 680
SfaNI	GCATC	2 cut(s)	937, 985
SfoI	GGCGCC	2 cut(s)	141, 505
Sfr303I	CCGCGG	4 cut(s)	96, 155, 280, 317
SgrBI	CCGCGG	4 cut(s)	96, 155, 280, 317
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	3 cut(s)	159, 238, 323
SmlI	CTYRAG	1 cut(s)	792
SmoI	CTYRAG	1 cut(s)	792
Sse9I	AATT	3 cut(s)	346, 916, 969
SspDI	GGCGCC	2 cut(s)	139, 503
StyD4I	CCNGG	4 cut(s)	119, 161, 210, 454
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	3 cut(s)	21, 87, 767
TaqII	GACCGA	2 cut(s)	602, 813
TasI	AATT	3 cut(s)	346, 916, 969
TauI	GCSGC	9 cut(s)	95, 98, 154, 203, 219, 279, 509, 512, 541
TfiI	GAWTC	5 cut(s)	172, 715, 769, 853, 1008
Tru1I	TTAA	3 cut(s)	363, 968, 981
Tru9I	TTAA	3 cut(s)	363, 968, 981
TscAI	CASTG	2 cut(s)	333, 634
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	8 cut(s)	25, 28, 31, 34, 37, 148, 451, 743
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	991
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	333, 634
VpaK11BI	GGWCC	3 cut(s)	159, 238, 323
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.