RLG00000007112
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
13660350 .. 13662520
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007112

Sequence Viewer

Length: 1065 bp
ATGGCCTTGGAGTTCGAGCAGCAGCAGCAGTTGAGTCTCACCACCAACCCCGTTGACGGCGACACTAACGGCGTCGACGCCTCGGCGGGGCGAGCCTCAGTCGAGGCTGGGGATGACGCCAGCAAGGCGCCGAGGCTGCCACGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGGAAGAGGGCGGCGGAGAGCCGGGGCGGCGGCGGAGGCGGGGGGAGGGCGGCGAGGTCGGAGTTCGGGTCGGGTCAGGCGGAGCCGAAATGGGCCGCGGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGGGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGAGGAGAGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCTGGCGCCGCCGCCGCTCCGGTTACGCTGGCTCTGGCCCCGCCGCCGCTGATGATATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGATGAGGTGGAGAAGCTTTTTGACAGCAGACAGGGGCCCACTGATGACGGGTTGTTTTCGGACTACGAGCAAGAGGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGGTCCTTTGCCAATATCAGAGAAGCTGTTCAAACCAATACAAGCGTCCCAAGGACAAGGTGCAGCAGGCCAAAAACAGCCACCTTCAATTCCCGAGATAGGTTCTACATCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCATTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCACAGAATTCTCATTCGCAACTGGATAGGGAGCAGAGGAAAGAACATTCTGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATGCTTTCATGAGAATCGCCGATAAGTTGTAG

Protein Analysis

355

Amino Acids

39.14

Weight (kDa)

5.83

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 48 - 140 4e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 500
AccBSI CCGCTC 1 cut(s) 512
AccI GTMKAC 1 cut(s) 75
AccII CGCG 3 cut(s) 275, 312, 713
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 955
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 5 cut(s) 72, 78, 117, 128, 501
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 1 cut(s) 287
AfeI AGCGCT 1 cut(s) 851
AfiI CCNNNNNNNGG 6 cut(s) 56, 87, 316, 577, 685, 818
AgsI TTSAA 2 cut(s) 751, 807
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 5 cut(s) 448, 604, 745, 1005, 1027
AluI AGCT 5 cut(s) 448, 604, 745, 1005, 1027
Alw26I GTCTC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 812
Aor51HI AGCGCT 1 cut(s) 851
AoxI GGCC 9 cut(s) 3, 270, 314, 348, 489, 531, 558, 623, 787
ApaI GGGCCC 1 cut(s) 627
ApeKI GCWGC 6 cut(s) 19, 22, 25, 136, 448, 782
ApoI RAATTY 1 cut(s) 955
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 3 cut(s) 130, 503, 852
AspS9I GGNCC 8 cut(s) 147, 270, 314, 319, 532, 623, 624, 722
AsuC2I CCSGG 3 cut(s) 151, 200, 453
AsuHPI GGTGA 3 cut(s) 31, 316, 427
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 3 cut(s) 147, 319, 722
BaeGI GKGCMC 1 cut(s) 627
BanI GGYRCC 2 cut(s) 127, 500
BanII GRGCYC 2 cut(s) 627, 680
BbvI GCAGC 6 cut(s) 31, 34, 37, 123, 435, 794
BccI CCATC 1 cut(s) 857
BceAI ACGGC 3 cut(s) 73, 85, 476
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 3 cut(s) 151, 200, 453
BcoDI GTCTC 1 cut(s) 41
BfoI RGCGCY 3 cut(s) 131, 504, 853
BglI GCCNNNNNGGC 2 cut(s) 125, 204
Bme1390I CCNGG 4 cut(s) 151, 200, 453, 720
Bme18I GGWCC 3 cut(s) 147, 319, 722
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 8 cut(s) 147, 270, 314, 319, 532, 623, 624, 722
BmiI GGNNCC 8 cut(s) 129, 149, 261, 502, 534, 624, 625, 677
BmrFI CCNGG 4 cut(s) 151, 200, 453, 720
BmsI GCATC 1 cut(s) 1024
BpuEI CTTGAG 1 cut(s) 816
BpuMI CCSGG 3 cut(s) 151, 200, 453
BsaHI GRCGYC 5 cut(s) 72, 78, 117, 128, 501
BsaJI CCNNGG 9 cut(s) 6, 81, 131, 140, 199, 273, 310, 452, 769
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 87, 316, 577, 685, 818
Bse118I RCCGGY 2 cut(s) 316, 350
Bse1I ACTGG 2 cut(s) 322, 975
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 9 cut(s) 6, 81, 131, 140, 199, 273, 310, 452, 769
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 6 cut(s) 56, 87, 316, 577, 685, 818
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 322, 975
BseRI GAGGAG 3 cut(s) 448, 677, 884
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 6 cut(s) 31, 34, 37, 123, 435, 794
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 801
Bsh1236I CGCG 3 cut(s) 275, 312, 713
BshFI GGCC 9 cut(s) 5, 272, 316, 350, 491, 533, 560, 625, 789
BshNI GGYRCC 2 cut(s) 127, 500
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 8 cut(s) 151, 199, 317, 328, 351, 452, 515, 694
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 6 cut(s) 56, 87, 316, 577, 685, 818
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 751
BsnI GGCC 9 cut(s) 5, 272, 316, 350, 491, 533, 560, 625, 789
BsoBI CYCGRG 1 cut(s) 812
Bsp120I GGGCCC 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 627, 680
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 9 cut(s) 5, 272, 316, 350, 491, 533, 560, 625, 789
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 3 cut(s) 275, 312, 713
BspHI TCATGA 1 cut(s) 1041
BspLI GGNNCC 8 cut(s) 129, 149, 261, 502, 534, 624, 625, 677
BspT107I GGYRCC 2 cut(s) 127, 500
BsrBI CCGCTC 1 cut(s) 512
BsrFI RCCGGY 2 cut(s) 316, 350
BsrI ACTGG 2 cut(s) 322, 975
BssAI RCCGGY 2 cut(s) 316, 350
BssECI CCNNGG 9 cut(s) 6, 81, 131, 140, 199, 273, 310, 452, 769
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 5 cut(s) 72, 78, 117, 128, 501
BssT1I CCWWGG 2 cut(s) 6, 769
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 2 cut(s) 176, 326
BstACI GRCGYC 5 cut(s) 72, 78, 117, 128, 501
BstC8I GCNNGC 8 cut(s) 93, 121, 314, 352, 525, 787, 933, 1029
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 3 cut(s) 140, 273, 310
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 3 cut(s) 275, 312, 713
BstH2I RGCGCY 3 cut(s) 131, 504, 853
BstHHI GCGC 3 cut(s) 130, 503, 852
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 7 cut(s) 25, 92, 125, 136, 204, 213, 509
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 4 cut(s) 149, 198, 451, 718
BstSLI GKGCMC 1 cut(s) 627
BstUI CGCG 3 cut(s) 275, 312, 713
BstV1I GCAGC 6 cut(s) 31, 34, 37, 123, 435, 794
BsuRI GGCC 9 cut(s) 5, 272, 316, 350, 491, 533, 560, 625, 789
BtgI CCRYGG 3 cut(s) 140, 273, 310
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 329, 627
Cac8I GCNNGC 8 cut(s) 93, 121, 314, 352, 525, 787, 933, 1029
CciI TCATGA 1 cut(s) 1041
CfoI GCGC 3 cut(s) 130, 503, 852
Cfr10I RCCGGY 2 cut(s) 316, 350
Cfr13I GGNCC 8 cut(s) 147, 270, 314, 319, 532, 623, 624, 722
Cfr42I CCGCGG 2 cut(s) 276, 313
CseI GACGC 4 cut(s) 61, 86, 125, 753
Csp6I GTAC 1 cut(s) 286
CviAII CATG 2 cut(s) 910, 1042
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 97
DinI GGCGCC 2 cut(s) 129, 502
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraIII CACNNNGTG 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 2 cut(s) 176, 326
EarI CTCTTC 2 cut(s) 176, 326
EciI GGCGGA 3 cut(s) 206, 225, 272
Eco130I CCWWGG 2 cut(s) 6, 769
Eco24I GRGCYC 2 cut(s) 627, 680
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 3 cut(s) 147, 319, 722
Eco47III AGCGCT 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 812
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 623, 722
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 6, 769
EcoT38I GRGCYC 2 cut(s) 627, 680
EgeI GGCGCC 2 cut(s) 129, 502
EheI GGCGCC 2 cut(s) 129, 502
ErhI CCWWGG 2 cut(s) 6, 769
FaeI CATG 2 cut(s) 913, 1045
FaiI YATR 4 cut(s) 477, 482, 911, 1043
FaqI GGGAC 1 cut(s) 751
FatI CATG 2 cut(s) 909, 1041
FauI CCCGC 4 cut(s) 79, 209, 305, 543
FblI GTMKAC 1 cut(s) 75
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 2 cut(s) 627, 680
GlaI GCGC 3 cut(s) 129, 502, 851
GsaI CCCAGC 1 cut(s) 111
HaeII RGCGCY 3 cut(s) 131, 504, 853
HaeIII GGCC 9 cut(s) 5, 272, 316, 350, 491, 533, 560, 625, 789
HapII CCGG 8 cut(s) 151, 199, 317, 328, 351, 452, 515, 694
HgaI GACGC 4 cut(s) 61, 86, 125, 753
HhaI GCGC 3 cut(s) 130, 503, 852
Hin1I GRCGYC 5 cut(s) 72, 78, 117, 128, 501
Hin1II CATG 2 cut(s) 913, 1045
Hin6I GCGC 3 cut(s) 128, 501, 850
HinP1I GCGC 3 cut(s) 128, 501, 850
HincII GTYRAC 2 cut(s) 55, 76
HindII GTYRAC 2 cut(s) 55, 76
HindIII AAGCTT 2 cut(s) 602, 1025
HinfI GANTC 7 cut(s) 34, 160, 404, 665, 715, 892, 1047
HpaII CCGG 8 cut(s) 151, 199, 317, 328, 351, 452, 515, 694
HphI GGTGA 3 cut(s) 31, 316, 427
Hpy166II GTNNAC 4 cut(s) 55, 76, 147, 307
Hpy188I TCNGA 7 cut(s) 238, 556, 585, 649, 675, 739, 1000
Hpy188III TCNNGA 3 cut(s) 812, 833, 1042
Hpy8I GTNNAC 4 cut(s) 55, 76, 147, 307
Hpy99I CGWCG 3 cut(s) 77, 80, 286
HpyAV CCTTC 3 cut(s) 385, 568, 813
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 5 cut(s) 291, 782, 857, 889, 1031
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 92, 125, 136, 204, 213, 509
HpyF3I CTNAG 1 cut(s) 97
Hsp92I GRCGYC 5 cut(s) 72, 78, 117, 128, 501
Hsp92II CATG 2 cut(s) 913, 1045
HspAI GCGC 3 cut(s) 128, 501, 850
KasI GGCGCC 2 cut(s) 127, 500
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
KspI CCGCGG 2 cut(s) 276, 313
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 5 cut(s) 259, 339, 517, 675, 979
Lsp1109I GCAGC 6 cut(s) 31, 34, 37, 123, 435, 794
LweI GCATC 1 cut(s) 1024
MaeIII GTNAC 1 cut(s) 517
MalI GATC 1 cut(s) 368
MbiI CCGCTC 1 cut(s) 512
MboI GATC 1 cut(s) 366
MboII GAAGA 3 cut(s) 193, 343, 376
MhlI GDGCHC 2 cut(s) 627, 680
MluCI AATT 4 cut(s) 343, 807, 955, 1008
Mly113I GGCGCC 2 cut(s) 128, 501
MlyI GAGTC 3 cut(s) 43, 413, 674
MmeI TCCRAC 2 cut(s) 216, 653
MroNI GCCGGC 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 746
MseI TTAA 3 cut(s) 360, 1007, 1020
MspA1I CMGCKG 3 cut(s) 275, 312, 544
MspI CCGG 8 cut(s) 151, 199, 317, 328, 351, 452, 515, 694
MspR9I CCNGG 4 cut(s) 151, 200, 453, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 3 cut(s) 275, 312, 713
MwoI GCNNNNNNNGC 7 cut(s) 25, 92, 125, 136, 204, 213, 509
NaeI GCCGGC 1 cut(s) 352
NarI GGCGCC 2 cut(s) 128, 501
NciI CCSGG 3 cut(s) 151, 200, 453
NdeII GATC 1 cut(s) 366
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 913, 1045
NlaIV GGNNCC 8 cut(s) 129, 149, 261, 502, 534, 624, 625, 677
NmeAIII GCCGAG 3 cut(s) 62, 156, 586
PagI TCATGA 1 cut(s) 1041
PdiI GCCGGC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 4 cut(s) 160, 715, 892, 1047
PleI GAGTC 3 cut(s) 42, 412, 673
PluTI GGCGCC 2 cut(s) 131, 504
PpsI GAGTC 3 cut(s) 42, 412, 673
PpuMI RGGWCCY 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 718
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 8 cut(s) 129, 149, 261, 502, 534, 624, 625, 677
PspOMI GGGCCC 1 cut(s) 623
PspPI GGNCC 8 cut(s) 147, 270, 314, 319, 532, 623, 624, 722
PspPPI RGGWCCY 1 cut(s) 722
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacII CCGCGG 2 cut(s) 276, 313
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 360, 1007, 1020
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 8 cut(s) 147, 270, 314, 319, 532, 623, 624, 722
SchI GAGTC 3 cut(s) 43, 413, 674
ScrFI CCNGG 4 cut(s) 151, 200, 453, 720
SduI GDGCHC 2 cut(s) 627, 680
SfaNI GCATC 1 cut(s) 1024
SfoI GGCGCC 2 cut(s) 129, 502
Sfr303I CCGCGG 2 cut(s) 276, 313
SgrBI CCGCGG 2 cut(s) 276, 313
SgrDI CGTCGACG 1 cut(s) 74
SinI GGWCC 3 cut(s) 147, 319, 722
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
Sse9I AATT 4 cut(s) 343, 807, 955, 1008
SspDI GGCGCC 2 cut(s) 127, 500
StyD4I CCNGG 4 cut(s) 149, 198, 451, 718
StyI CCWWGG 2 cut(s) 6, 769
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 15, 75, 102
TaqII GACCGA 2 cut(s) 602, 852
TasI AATT 4 cut(s) 343, 807, 955, 1008
TfiI GAWTC 4 cut(s) 160, 715, 892, 1047
Tru1I TTAA 3 cut(s) 360, 1007, 1020
Tru9I TTAA 3 cut(s) 360, 1007, 1020
TscAI CASTG 2 cut(s) 329, 634
TseI GCWGC 6 cut(s) 19, 22, 25, 136, 448, 782
TspDTI ATGAA 1 cut(s) 1030
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 329, 634
VpaK11BI GGWCC 3 cut(s) 147, 319, 722
XagI CCTNNNNNAGG 1 cut(s) 575
XapI RAATTY 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.