Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

51148239 .. 51152640

Gene Structure 4402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTCATGGCCTTGGAGTTCGAGCAGCAGCATCAGCGGCAGTTGAGTCTCACCACCAACCCCGTTGACGGCGACACTAACGGCGTCGACGCTGCGGCCGGGCGAGCCTCAGCCGAGGCCGGGGATGACTCCAGCAAGGCGCCCAGGCTGCCGCGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGCAAGAGGGCGGCGGAGAGCCGGGGCGGCGGCGGGAGGACGGCCAGGTCGGAGTTCGGGTCGGGTCAGGTGGAGCCGAAATGGGCCGCCGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGCGGAGGGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCCGGCGCCGCCGCCGCCGCTCCGGTTACGCTGGCTCTGGCTCCGCCGCCGCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGACGAGGTGGAGAAGCTATTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGACGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCTTTGCCAATATCAGAGAAGCTGTTCAAACCAATACAAGCGTCCCAAGGACAAGGTAATGTCAACCTTTCATATTACCTGTATATGGTGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

5.94

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	52 - 142	2.6e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	139, 503
AccBSI	CCGCTC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	3 cut(s)	154, 315, 719
AcoI	YGGCCR	3 cut(s)	96, 231, 351
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	3 cut(s)	84, 140, 504
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 814
AgsI	TTSAA	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	143, 233
AluBI	AGCT	4 cut(s)	451, 610, 728, 751
AluI	AGCT	4 cut(s)	451, 610, 728, 751
Alw26I	GTCTC	1 cut(s)	53
ApaI	GGGCCC	1 cut(s)	633
ApeKI	GCWGC	5 cut(s)	25, 28, 92, 148, 451
Asp700I	GAANNNNTTC	1 cut(s)	752
AspLEI	GCGC	3 cut(s)	142, 388, 506
AspS9I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
AsuC2I	CCSGG	5 cut(s)	100, 121, 163, 212, 456
AsuHPI	GGTGA	3 cut(s)	43, 319, 430
AvaII	GGWCC	2 cut(s)	159, 322
BaeGI	GKGCMC	1 cut(s)	633
BanI	GGYRCC	2 cut(s)	139, 503
BanII	GRGCYC	2 cut(s)	633, 686
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	5 cut(s)	37, 40, 79, 135, 438
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	5 cut(s)	85, 97, 246, 263, 479
BciT130I	CCWGG	2 cut(s)	145, 235
BcnI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
BcoDI	GTCTC	1 cut(s)	53
BfoI	RGCGCY	2 cut(s)	143, 507
BglI	GCCNNNNNGGC	1 cut(s)	216
Bme1390I	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
Bme18I	GGWCC	2 cut(s)	159, 322
BmgT120I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
BmiI	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
BmrFI	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	109
BpuMI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
BsaHI	GRCGYC	3 cut(s)	84, 140, 504
BsaJI	CCNNGG	9 cut(s)	12, 114, 120, 143, 152, 211, 313, 455, 775
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 814
Bse118I	RCCGGY	2 cut(s)	319, 353
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	145, 235
BseDI	CCNNGG	9 cut(s)	12, 114, 120, 143, 152, 211, 313, 455, 775
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 814
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	633
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	37, 40, 79, 135, 438
Bsh1236I	CGCG	3 cut(s)	154, 315, 719
Bsh1285I	CGRYCG	1 cut(s)	99
BshNI	GGYRCC	2 cut(s)	139, 503
BsiEI	CGRYCG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 814
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	757
Bsp120I	GGGCCC	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	633, 686
Bsp143I	GATC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	3 cut(s)	154, 315, 719
BspLI	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
BspT107I	GGYRCC	2 cut(s)	139, 503
BsrBI	CCGCTC	1 cut(s)	518
BsrFI	RCCGGY	2 cut(s)	319, 353
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	2 cut(s)	319, 353
BssECI	CCNNGG	9 cut(s)	12, 114, 120, 143, 152, 211, 313, 455, 775
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	3 cut(s)	84, 140, 504
BssT1I	CCWWGG	2 cut(s)	12, 775
Bst2UI	CCWGG	2 cut(s)	145, 235
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	3 cut(s)	84, 140, 504
BstC8I	GCNNGC	4 cut(s)	105, 317, 355, 531
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	2 cut(s)	152, 313
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	3 cut(s)	154, 315, 719
BstH2I	RGCGCY	2 cut(s)	143, 507
BstHHI	GCGC	3 cut(s)	142, 388, 506
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	369
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
BstNI	CCWGG	2 cut(s)	145, 235
BstSCI	CCNGG	7 cut(s)	98, 119, 143, 161, 210, 233, 454
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	3 cut(s)	154, 315, 719
BstV1I	GCAGC	5 cut(s)	37, 40, 79, 135, 438
BstZI	CGGCCG	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	152, 313
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	332, 633
Cac8I	GCNNGC	4 cut(s)	105, 317, 355, 531
CfoI	GCGC	3 cut(s)	142, 388, 506
Cfr10I	RCCGGY	2 cut(s)	319, 353
Cfr13I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
Cfr42I	CCGCGG	2 cut(s)	155, 316
CseI	GACGC	3 cut(s)	73, 98, 759
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	109
DinI	GGCGCC	2 cut(s)	141, 505
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraIII	CACNNNGTG	1 cut(s)	307
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	3 cut(s)	96, 231, 351
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	2 cut(s)	218, 531
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	12, 775
Eco24I	GRGCYC	2 cut(s)	633, 686
Eco47I	GGWCC	2 cut(s)	159, 322
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	143, 233
EcoT14I	CCWWGG	2 cut(s)	12, 775
EcoT38I	GRGCYC	2 cut(s)	633, 686
EgeI	GGCGCC	2 cut(s)	141, 505
EheI	GGCGCC	2 cut(s)	141, 505
ErhI	CCWWGG	2 cut(s)	12, 775
FaeI	CATG	1 cut(s)	10
FaiI	YATR	6 cut(s)	8, 480, 485, 802, 813, 815
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	1 cut(s)	6
FauI	CCCGC	2 cut(s)	215, 308
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	633, 686
GlaI	GCGC	3 cut(s)	141, 387, 505
GsuI	CTGGAG	1 cut(s)	115
HaeII	RGCGCY	2 cut(s)	143, 507
HgaI	GACGC	3 cut(s)	73, 98, 759
HhaI	GCGC	3 cut(s)	142, 388, 506
Hin1I	GRCGYC	3 cut(s)	84, 140, 504
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	3 cut(s)	140, 386, 504
HinP1I	GCGC	3 cut(s)	140, 386, 504
HincII	GTYRAC	3 cut(s)	67, 88, 793
HindII	GTYRAC	3 cut(s)	67, 88, 793
HinfI	GANTC	6 cut(s)	46, 128, 172, 407, 671, 721
HphI	GGTGA	3 cut(s)	43, 319, 430
Hpy166II	GTNNAC	5 cut(s)	67, 88, 159, 310, 793
Hpy188I	TCNGA	6 cut(s)	241, 562, 591, 655, 681, 745
Hpy8I	GTNNAC	5 cut(s)	67, 88, 159, 310, 793
Hpy99I	CGWCG	5 cut(s)	89, 92, 289, 599, 644
HpyAV	CCTTC	2 cut(s)	388, 574
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
HpyF3I	CTNAG	1 cut(s)	109
Hsp92I	GRCGYC	3 cut(s)	84, 140, 504
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	3 cut(s)	140, 386, 504
KasI	GGCGCC	2 cut(s)	139, 503
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	2 cut(s)	155, 316
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	6 cut(s)	262, 342, 523, 544, 681, 733
Lsp1109I	GCAGC	5 cut(s)	37, 40, 79, 135, 438
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	371
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	346, 379
MhlI	GDGCHC	2 cut(s)	633, 686
MluCI	AATT	1 cut(s)	346
Mly113I	GGCGCC	2 cut(s)	140, 504
MlyI	GAGTC	4 cut(s)	55, 122, 416, 680
MmeI	TCCRAC	2 cut(s)	219, 659
MroNI	GCCGGC	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	4 cut(s)	37, 154, 315, 550
MspR9I	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
MvaI	CCWGG	2 cut(s)	145, 235
MvnI	CGCG	3 cut(s)	154, 315, 719
MwoI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	2 cut(s)	140, 504
NciI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
NmeAIII	GCCGAG	2 cut(s)	139, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	2 cut(s)	172, 721
PleI	GAGTC	4 cut(s)	54, 122, 415, 679
PluTI	GGCGCC	2 cut(s)	143, 507
PpsI	GAGTC	4 cut(s)	54, 122, 415, 679
Psp6I	CCWGG	2 cut(s)	143, 233
PspGI	CCWGG	2 cut(s)	143, 233
PspN4I	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
PspOMI	GGGCCC	1 cut(s)	629
PspPI	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacII	CCGCGG	2 cut(s)	155, 316
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
SchI	GAGTC	4 cut(s)	55, 122, 416, 680
ScrFI	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
SduI	GDGCHC	2 cut(s)	633, 686
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	2 cut(s)	141, 505
Sfr303I	CCGCGG	2 cut(s)	155, 316
SgrBI	CCGCGG	2 cut(s)	155, 316
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	2 cut(s)	159, 322
Sse9I	AATT	1 cut(s)	346
SspDI	GGCGCC	2 cut(s)	139, 503
StyD4I	CCNGG	7 cut(s)	98, 119, 143, 161, 210, 233, 454
StyI	CCWWGG	2 cut(s)	12, 775
TaqI	TCGA	2 cut(s)	21, 87
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	172, 721
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	332, 640
TseI	GCWGC	5 cut(s)	25, 28, 92, 148, 451
TspDTI	ATGAA	1 cut(s)	789
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	332, 640
VpaK11BI	GGWCC	2 cut(s)	159, 322
XagI	CCTNNNNNAGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.