MD13G1130000.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
9840715 .. 9843425
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1130000.v1.1.491

Sequence Viewer

Length: 1008 bp
ATGGTCATGGCCTTGGAGCAGCAGGTGGTCCTGAGCCCCGTTGACGGCGACGCTAACGGCGCTGACGCCCGCCACCCCACGTCCGGTGACGACTCCAGCAAGGCGCCGAGGCTGCCACGCTGGACGCGCCAGGAGATTCTCGTGCTGATAAACGGTAAGCGGTACGCGGAGAGCCGGGGCGGGGGCCGGACTCCGAGGTCGGACTTCGGGTCGGGTCAGTCGGAGCCTAAATGGGCGGCGGTGTCGAACTACTGCAAGAAGCACGGGGTGAACCGGGAGCCGGTCCAGTGCAGGAAGCGGTGGAGCAATTTGGCGGGGGACTTCAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCCTTTTGGGTGATGAGGAACGACCTGAGGAGAGAGAGGAAGCTGCCGGGGTTTTTCGATAAGGAGGTCTACGATATAATGGAGGCGGTTCCAGGTACTCCGAGTACGCTGGCGTTACCGGGTCCGAACCGGGTGGAGTCCGAGGAGTTGAAGGAGGAGGGGATGGCGGAGGAGGCTGAGAACTTGTTCGATAGCATACAGAGACCGACTGAGGACGGGTTATTTTTGGATGACGAGTCTGGTCGGAGCCCCGAAAAGGAAGTCCGGTTCAAGGAGGGTCCGGTGATTTCAGCTCCCTTGCCAATATCAGAGAAGGTGTACAAACCAATGCCACAAGGACATCAAGGACAAGGTGCAGCAGACCCAAAACACCCAGCTTCAATCCCAGAGTTTGGATCTACCTCTCAAGACCGGAAGCGGAAGCGTTGTGCAACGGAAGGAGACGAGGAAGCATCCGATCTGCAGAATCAGTTGGTTGATGTCATGGAAAGGAATAGCAAAGTGCTGGCTGACTACCTTCACGCTCAGAATTCCCATTCTCAACTCGACCGGGAGCAGAGGAAAGAGCATTCCGATAACGTGGTTGCTGTTCTTAACAAGCTTGCAGATGCATTCATGCGAATCGCCGAGAAATTGTAG

Protein Analysis

336

Amino Acids

37.74

Weight (kDa)

5.69

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 40 - 129 1.3e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
AasI GACNNNNNNGTC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 1 cut(s) 438
AccII CGCG 2 cut(s) 127, 167
AclWI GGATC 1 cut(s) 772
AcsI RAATTY 1 cut(s) 898
AcyI GRCGYC 2 cut(s) 66, 104
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 4 cut(s) 164, 466, 475, 689
AfiI CCNNNNNNNGG 7 cut(s) 44, 83, 181, 280, 625, 640, 761
AgsI TTSAA 4 cut(s) 325, 520, 640, 750
AhdI GACNNNNNGTC 1 cut(s) 208
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 2 cut(s) 129, 460
AloI GAACNNNNNNTCC 2 cut(s) 620, 652
AluBI AGCT 4 cut(s) 412, 662, 746, 970
AluI AGCT 4 cut(s) 412, 662, 746, 970
Alw26I GTCTC 2 cut(s) 565, 804
AlwI GGATC 1 cut(s) 772
AoxI GGCC 2 cut(s) 9, 184
ApeKI GCWGC 4 cut(s) 19, 112, 412, 725
ApoI RAATTY 1 cut(s) 898
ArsI GACNNNNNNTTYG 2 cut(s) 615, 647
Asp700I GAANNNNTTC 1 cut(s) 554
AspLEI GCGC 4 cut(s) 62, 106, 129, 349
AspS9I GGNCC 5 cut(s) 28, 184, 283, 491, 647
AsuC2I CCSGG 6 cut(s) 176, 275, 417, 489, 500, 920
AsuHPI GGTGA 4 cut(s) 98, 280, 391, 664
AvaII GGWCC 4 cut(s) 28, 283, 491, 647
AxyI CCTNAGG 1 cut(s) 395
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 38, 620
BauI CACGAG 1 cut(s) 140
BbvI GCAGC 4 cut(s) 31, 99, 399, 737
BccI CCATC 1 cut(s) 526
BceAI ACGGC 2 cut(s) 61, 73
BciT130I CCWGG 2 cut(s) 131, 462
BcnI CCSGG 6 cut(s) 176, 275, 417, 489, 500, 920
BcoDI GTCTC 2 cut(s) 565, 804
BfmI CTRYAG 1 cut(s) 830
BfoI RGCGCY 2 cut(s) 63, 107
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 5 cut(s) 20, 113, 237, 413, 726
BlsI GCNGC 5 cut(s) 21, 114, 238, 414, 727
Bme1390I CCNGG 8 cut(s) 131, 176, 275, 417, 462, 489, 500, 920
Bme18I GGWCC 4 cut(s) 28, 283, 491, 647
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 5 cut(s) 28, 184, 283, 491, 647
BmiI GGNNCC 8 cut(s) 105, 185, 225, 279, 459, 492, 617, 648
BmrFI CCNGG 8 cut(s) 131, 176, 275, 417, 462, 489, 500, 920
BmsI GCATC 2 cut(s) 830, 967
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 6 cut(s) 176, 275, 417, 489, 500, 920
BsaHI GRCGYC 2 cut(s) 66, 104
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 6 cut(s) 12, 107, 175, 194, 416, 510
BsaWI WCCGGW 4 cut(s) 83, 633, 649, 780
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 83, 181, 280, 625, 640, 761
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 131, 462
BseDI CCNNGG 6 cut(s) 12, 107, 175, 194, 416, 510
BseGI GGATG 3 cut(s) 537, 604, 821
BseLI CCNNNNNNNGG 7 cut(s) 44, 83, 181, 280, 625, 640, 761
BseMII CTCAG 5 cut(s) 23, 386, 537, 570, 908
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 4 cut(s) 412, 527, 539, 554
BseXI GCAGC 4 cut(s) 31, 99, 399, 737
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 2 cut(s) 310, 744
Bsh1236I CGCG 2 cut(s) 127, 167
Bsh1285I CGRYCG 1 cut(s) 919
BshFI GGCC 2 cut(s) 11, 186
BshNI GGYRCC 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 919
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 7 cut(s) 44, 83, 181, 280, 625, 640, 761
BsmAI GTCTC 2 cut(s) 565, 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 2 cut(s) 937, 980
BsnI GGCC 2 cut(s) 11, 186
Bso31I GGTCTC 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 38, 620
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 3 cut(s) 330, 764, 826
BspANI GGCC 2 cut(s) 11, 186
BspCNI CTCAG 5 cut(s) 24, 387, 538, 571, 907
BspFNI CGCG 2 cut(s) 127, 167
BspLI GGNNCC 8 cut(s) 105, 185, 225, 279, 459, 492, 617, 648
BspMAI CTGCAG 1 cut(s) 834
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 772
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 6 cut(s) 12, 107, 175, 194, 416, 510
BssMI GATC 3 cut(s) 330, 764, 826
BssNI GRCGYC 2 cut(s) 66, 104
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 131, 462
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 66, 104
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 4 cut(s) 70, 480, 876, 972
BstDEI CTNAG 5 cut(s) 32, 395, 546, 579, 894
BstF5I GGATG 3 cut(s) 537, 604, 821
BstFNI CGCG 2 cut(s) 127, 167
BstH2I RGCGCY 2 cut(s) 63, 107
BstHHI GCGC 4 cut(s) 62, 106, 129, 349
BstKTI GATC 3 cut(s) 333, 767, 829
BstMAI GTCTC 2 cut(s) 565, 804
BstMBI GATC 3 cut(s) 330, 764, 826
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 4 cut(s) 59, 112, 126, 542
BstNI CCWGG 2 cut(s) 131, 462
BstSCI CCNGG 8 cut(s) 129, 174, 273, 415, 460, 487, 498, 918
BstSFI CTRYAG 1 cut(s) 830
BstUI CGCG 2 cut(s) 127, 167
BstV1I GCAGC 4 cut(s) 31, 99, 399, 737
BstX2I RGATCY 1 cut(s) 764
BstYI RGATCY 1 cut(s) 764
Bsu36I CCTNAGG 1 cut(s) 395
BsuRI GGCC 2 cut(s) 11, 186
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 3 cut(s) 537, 604, 821
BtsIMutI CAGTG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 4 cut(s) 70, 480, 876, 972
CfoI GCGC 4 cut(s) 62, 106, 129, 349
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 5 cut(s) 28, 184, 283, 491, 647
CseI GACGC 3 cut(s) 59, 74, 133
Csp6I GTAC 4 cut(s) 163, 465, 474, 688
CviAII CATG 3 cut(s) 7, 853, 985
CviQI GTAC 4 cut(s) 163, 465, 474, 688
DdeI CTNAG 5 cut(s) 32, 395, 546, 579, 894
DinI GGCGCC 1 cut(s) 105
DpnI GATC 3 cut(s) 332, 766, 828
DpnII GATC 3 cut(s) 330, 764, 826
DraIII CACNNNGTG 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 38, 620
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 4 cut(s) 28, 283, 491, 647
Eco81I CCTNAGG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 129, 460
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 2 cut(s) 38, 620
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 3 cut(s) 10, 856, 988
FaiI YATR 5 cut(s) 8, 446, 566, 854, 986
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 6, 852, 984
FauI CCCGC 3 cut(s) 77, 173, 307
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 5 cut(s) 20, 113, 237, 413, 726
FokI GGATG 3 cut(s) 544, 611, 808
FriOI GRGCYC 2 cut(s) 38, 620
Fsp4HI GCNGC 5 cut(s) 20, 113, 237, 413, 726
GlaI GCGC 4 cut(s) 61, 105, 128, 348
GluI GCNGC 5 cut(s) 20, 113, 237, 413, 726
GsaI CCCAGC 1 cut(s) 746
GsuI CTGGAG 1 cut(s) 79
HaeII RGCGCY 2 cut(s) 63, 107
HaeIII GGCC 2 cut(s) 11, 186
HgaI GACGC 3 cut(s) 59, 74, 133
HhaI GCGC 4 cut(s) 62, 106, 129, 349
Hin1I GRCGYC 2 cut(s) 66, 104
Hin1II CATG 3 cut(s) 10, 856, 988
Hin6I GCGC 4 cut(s) 60, 104, 127, 347
HinP1I GCGC 4 cut(s) 60, 104, 127, 347
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 8 cut(s) 92, 136, 190, 368, 506, 605, 835, 990
HphI GGTGA 4 cut(s) 98, 280, 391, 664
Hpy166II GTNNAC 4 cut(s) 43, 271, 439, 688
Hpy188III TCNNGA 3 cut(s) 31, 325, 776
Hpy8I GTNNAC 4 cut(s) 43, 271, 439, 688
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 349, 514, 676, 800, 896
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 80, 948
HpyCH4V TGCA 7 cut(s) 255, 291, 725, 800, 832, 974, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 112, 126, 542
HpyF3I CTNAG 5 cut(s) 32, 395, 546, 579, 894
HpySE526I ACGT 2 cut(s) 80, 948
Hsp92I GRCGYC 2 cut(s) 66, 104
Hsp92II CATG 3 cut(s) 10, 856, 988
HspAI GCGC 4 cut(s) 60, 104, 127, 347
KasI GGCGCC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 330, 764, 826
LmnI GCTCC 7 cut(s) 16, 223, 277, 303, 615, 667, 922
Lsp1109I GCAGC 4 cut(s) 31, 99, 399, 737
LweI GCATC 2 cut(s) 830, 967
MaeII ACGT 2 cut(s) 80, 948
MaeIII GTNAC 2 cut(s) 86, 483
MalI GATC 3 cut(s) 332, 766, 828
MboI GATC 3 cut(s) 330, 764, 826
MboII GAAGA 1 cut(s) 340
MflI RGATCY 1 cut(s) 764
MhlI GDGCHC 2 cut(s) 38, 620
MluCI AATT 3 cut(s) 307, 898, 1001
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 5 cut(s) 86, 184, 377, 515, 614
MmeI TCCRAC 3 cut(s) 180, 201, 593
Mph1103I ATGCAT 1 cut(s) 982
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 1 cut(s) 963
MspR9I CCNGG 8 cut(s) 131, 176, 275, 417, 462, 489, 500, 920
Mva1269I GAATGC 2 cut(s) 937, 980
MvaI CCWGG 2 cut(s) 131, 462
MvnI CGCG 2 cut(s) 127, 167
MwoI GCNNNNNNNGC 4 cut(s) 59, 112, 126, 542
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 6 cut(s) 176, 275, 417, 489, 500, 920
NdeII GATC 3 cut(s) 330, 764, 826
NlaIII CATG 3 cut(s) 10, 856, 988
NlaIV GGNNCC 8 cut(s) 105, 185, 225, 279, 459, 492, 617, 648
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 982
PaqCI CACCTGC 1 cut(s) 13
PctI GAATGC 2 cut(s) 937, 980
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 136, 835, 990
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 5 cut(s) 21, 114, 238, 414, 727
PleI GAGTC 5 cut(s) 86, 184, 376, 514, 613
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 5 cut(s) 86, 184, 376, 514, 613
Psp6I CCWGG 2 cut(s) 129, 460
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 2 cut(s) 129, 460
PspN4I GGNNCC 8 cut(s) 105, 185, 225, 279, 459, 492, 617, 648
PspPI GGNCC 5 cut(s) 28, 184, 283, 491, 647
PstI CTGCAG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 764
RsaI GTAC 4 cut(s) 164, 466, 475, 689
RsaNI GTAC 4 cut(s) 163, 465, 474, 688
SaqAI TTAA 1 cut(s) 963
SatI GCNGC 5 cut(s) 20, 113, 237, 413, 726
Sau3AI GATC 3 cut(s) 330, 764, 826
Sau96I GGNCC 5 cut(s) 28, 184, 283, 491, 647
SchI GAGTC 5 cut(s) 86, 184, 377, 515, 614
ScrFI CCNGG 8 cut(s) 131, 176, 275, 417, 462, 489, 500, 920
SduI GDGCHC 2 cut(s) 38, 620
SfaNI GCATC 2 cut(s) 830, 967
SfcI CTRYAG 1 cut(s) 830
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 4 cut(s) 28, 283, 491, 647
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
Sse9I AATT 3 cut(s) 307, 898, 1001
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 8 cut(s) 129, 174, 273, 415, 460, 487, 498, 918
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 83, 951
TaqI TCGA 4 cut(s) 245, 426, 558, 915
TaqII GACCGA 1 cut(s) 589
TasI AATT 3 cut(s) 307, 898, 1001
TatI WGTACW 1 cut(s) 687
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 136, 835, 990
Tru1I TTAA 1 cut(s) 963
Tru9I TTAA 1 cut(s) 963
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 4 cut(s) 19, 112, 412, 725
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 973
TspGWI ACGGA 2 cut(s) 380, 818
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 4 cut(s) 28, 283, 491, 647
XapI RAATTY 1 cut(s) 898
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.