MD16G1130200.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
9499795 .. 9502710
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1130200.v1.1.491

Sequence Viewer

Length: 1035 bp
ATGGTCATGGCCTCGGTGCAGCAGGTGACCCTGATCCCCGTTGACGGCGACAGTAACGGCGTTGACGCCCGCAACCCCACGTCAGCCGACACCGGTGGTGATGACTCCAGCAAGGCGCCGAGGCTGCCACGCTGGACGCGGCAGGAGATTCTCGTGCTGATAAACGGTAAGCGGTATGCGGAGAGCCGGGGCGGGGTGCGGGCACCCAGGTCGGACTTCGGGTCGGGTCAGTTGGAGCCCAAATGGGCGGCGGTGTCGAACTATTGTAAGAAGCACGGGGTGAGCCGGGAGCCGGTCCAGTGCCGGAAGCGGTGGAGCAATTTGGCGGGGGACTTCAAGAAGATCAGGGAGTGGGAGGTGCAGAGGAAGGACGAAACGGAGTCGTATTGGGTGATGAGGAACGACCTGAGGAGAGAGAGGAAGCTGCCGGGGTTTTTCGATAAGGAAGTTTACGATATAATGGAGGCGGTTCCAGGTACTCCGATTACGCTGGCTTTGCCGGGTCCGAACCGGGTGGAGTCCGAGGAGGTGAAGGAGGGGACGGCGGAGGAGGCTGAGAACTTGTTCGATAGTATACAGAGGCCGACTGAGGAGGGGTTGTTTTCGGATGACGAGTCTGGTCGGAGCCCCGAAAAGGAAGTCCGGTTCAAGGAGGGTCCGGGGATTTCAGCTCCCTTGCCAATATCAGAGAAGGCGTACAAACCAACACCACAAGGACATCAAGAACCTCAAGCACATCAAGGACAAGGTGCAGCAGGCCCAAAACAGCCAGCTTCGATCCCAGAGATTGGATCTACCTCTCAAGACCGGAAGCGGAAGCGTTTTGCAATGGAAGGAGACGAGGAAGGATCCACTCTGGAGAACCAGTTGATTGATGTCATGGAAAGGAACGGCAAAATGCTGGGTGACTACCTCCATGCTCAGAACTCCCATTCTCAACTTGACCGGGAGCAGAGGAAAGAGCATTCCGATAACCTGGTTGCCGTTCTTAACAAGCTTGCAGATGCATTCATGCGAATCGCTGAGAAATTGTAG

Protein Analysis

345

Amino Acids

38.52

Weight (kDa)

5.73

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 44 - 132 1.3e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 115, 202
AccB7I CCANNNNNTGG 1 cut(s) 788
AccI GTMKAC 1 cut(s) 574
AccII CGCG 1 cut(s) 139
AclWI GGATC 5 cut(s) 28, 772, 799, 843, 856
AcyI GRCGYC 2 cut(s) 66, 116
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 2 cut(s) 478, 698
AfiI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 634, 649, 788
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 2 cut(s) 337, 649
AhdI GACNNNNNGTC 1 cut(s) 220
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 3 cut(s) 206, 472, 975
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 4 cut(s) 424, 671, 773, 997
AluI AGCT 4 cut(s) 424, 671, 773, 997
Alw26I GTCTC 1 cut(s) 831
AlwI GGATC 5 cut(s) 28, 772, 799, 843, 856
AoxI GGCC 3 cut(s) 9, 581, 757
ApeKI GCWGC 4 cut(s) 19, 124, 424, 752
ArsI GACNNNNNNTTYG 2 cut(s) 624, 656
AsiGI ACCGGT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 4 cut(s) 295, 503, 656, 758
AsuC2I CCSGG 7 cut(s) 188, 287, 429, 501, 512, 660, 947
AsuHPI GGTGA 6 cut(s) 37, 110, 292, 403, 541, 917
AvaII GGWCC 3 cut(s) 295, 503, 656
AxyI CCTNAGG 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 848
BanI GGYRCC 2 cut(s) 115, 202
BanII GRGCYC 2 cut(s) 240, 629
BauI CACGAG 1 cut(s) 152
BbvI GCAGC 4 cut(s) 31, 111, 411, 764
BceAI ACGGC 5 cut(s) 61, 73, 558, 907, 968
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 3 cut(s) 208, 474, 977
BcnI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 660, 947
BcoDI GTCTC 1 cut(s) 831
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 753
BlsI GCNGC 6 cut(s) 21, 126, 141, 250, 426, 754
Bme18I GGWCC 3 cut(s) 295, 503, 656
BmeRI GACNNNNNGTC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 4 cut(s) 295, 503, 656, 758
BmiI GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 626, 657, 850
BmsI GCATC 1 cut(s) 994
BpmI CTGGAG 2 cut(s) 91, 878
BpuEI CTTGAG 2 cut(s) 714, 786
BpuMI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 660, 947
BsaHI GRCGYC 2 cut(s) 66, 116
BsaJI CCNNGG 7 cut(s) 12, 119, 187, 206, 428, 522, 659
BsaWI WCCGGW 3 cut(s) 92, 642, 807
BsaXI ACNNNNNCTCC 4 cut(s) 584, 614, 851, 881
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 193, 292, 634, 649, 788
Bse118I RCCGGY 2 cut(s) 92, 292
Bse1I ACTGG 2 cut(s) 298, 865
Bse21I CCTNAGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 834
BseBI CCWGG 3 cut(s) 208, 474, 977
BseDI CCNNGG 7 cut(s) 12, 119, 187, 206, 428, 522, 659
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 634, 649, 788
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 5 cut(s) 398, 546, 579, 935, 1014
BseNI ACTGG 2 cut(s) 298, 865
BseRI GAGGAG 4 cut(s) 424, 539, 563, 605
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 31, 111, 411, 764
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 3 cut(s) 38, 380, 771
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 11, 583, 759
BshNI GGYRCC 2 cut(s) 115, 202
BshTI ACCGGT 1 cut(s) 92
BslFI GGGAC 2 cut(s) 344, 553
BslI CCNNNNNNNGG 6 cut(s) 44, 193, 292, 634, 649, 788
BsmAI GTCTC 1 cut(s) 831
BsmBI CGTCTC 1 cut(s) 831
BsmFI GGGAC 2 cut(s) 344, 553
BsmI GAATGC 2 cut(s) 964, 1007
BsnI GGCC 3 cut(s) 11, 583, 759
Bsp1286I GDGCHC 3 cut(s) 205, 240, 629
Bsp143I GATC 5 cut(s) 33, 342, 777, 791, 848
BspANI GGCC 3 cut(s) 11, 583, 759
BspCNI CTCAG 5 cut(s) 399, 547, 580, 934, 1015
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 626, 657, 850
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 5 cut(s) 28, 772, 799, 843, 856
BspT107I GGYRCC 2 cut(s) 115, 202
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 2 cut(s) 92, 292
BsrI ACTGG 2 cut(s) 298, 865
BssAI RCCGGY 2 cut(s) 92, 292
BssECI CCNNGG 7 cut(s) 12, 119, 187, 206, 428, 522, 659
BssMI GATC 5 cut(s) 33, 342, 777, 791, 848
BssNAI GTATAC 1 cut(s) 575
BssNI GRCGYC 2 cut(s) 66, 116
BssSI CACGAG 1 cut(s) 152
Bst1107I GTATAC 1 cut(s) 575
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 3 cut(s) 208, 474, 977
Bst4CI ACNGT 2 cut(s) 53, 167
BstACI GRCGYC 2 cut(s) 66, 116
BstC8I GCNNGC 6 cut(s) 70, 201, 492, 757, 771, 999
BstDEI CTNAG 5 cut(s) 407, 555, 588, 921, 1023
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 613
BstFNI CGCG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 5 cut(s) 36, 345, 780, 794, 851
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 5 cut(s) 33, 342, 777, 791, 848
BstMWI GCNNNNNNNGC 3 cut(s) 124, 496, 551
BstNI CCWGG 3 cut(s) 208, 474, 977
BstPI GGTNACC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 4 cut(s) 31, 111, 411, 764
BstX2I RGATCY 2 cut(s) 791, 848
BstYI RGATCY 2 cut(s) 791, 848
BstZ17I GTATAC 1 cut(s) 575
Bsu36I CCTNAGG 1 cut(s) 407
BsuRI GGCC 3 cut(s) 11, 583, 759
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 13
Cac8I GCNNGC 6 cut(s) 70, 201, 492, 757, 771, 999
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 2 cut(s) 92, 292
Cfr13I GGNCC 4 cut(s) 295, 503, 656, 758
CseI GACGC 2 cut(s) 74, 145
CsiI ACCWGGT 1 cut(s) 975
Csp6I GTAC 2 cut(s) 477, 697
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 4 cut(s) 7, 880, 917, 1012
CviQI GTAC 2 cut(s) 477, 697
DdeI CTNAG 5 cut(s) 407, 555, 588, 921, 1023
DinI GGCGCC 1 cut(s) 117
DpnI GATC 5 cut(s) 35, 344, 779, 793, 850
DpnII GATC 5 cut(s) 33, 342, 777, 791, 848
DraIII CACNNNGTG 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 220
Eam1105I GACNNNNNGTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 560
Eco24I GRGCYC 2 cut(s) 240, 629
Eco47I GGWCC 3 cut(s) 295, 503, 656
Eco81I CCTNAGG 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 206, 472, 975
EcoT22I ATGCAT 1 cut(s) 1009
EcoT38I GRGCYC 2 cut(s) 240, 629
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 831
FaeI CATG 4 cut(s) 10, 883, 920, 1015
FaiI YATR 7 cut(s) 8, 177, 458, 575, 881, 918, 1013
FaqI GGGAC 2 cut(s) 344, 553
FatI CATG 4 cut(s) 6, 879, 916, 1011
FauI CCCGC 4 cut(s) 77, 185, 192, 319
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 753
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 2 cut(s) 240, 629
Fsp4HI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 753
GlaI GCGC 1 cut(s) 117
GluI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 753
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 2 cut(s) 91, 878
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 11, 583, 759
HgaI GACGC 2 cut(s) 74, 145
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 66, 116
Hin1II CATG 4 cut(s) 10, 883, 920, 1015
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 2 cut(s) 43, 64
HindII GTYRAC 2 cut(s) 43, 64
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 6 cut(s) 104, 148, 380, 518, 614, 1017
HphI GGTGA 6 cut(s) 37, 110, 292, 403, 541, 917
Hpy166II GTNNAC 4 cut(s) 43, 64, 451, 575
Hpy188I TCNGA 9 cut(s) 214, 483, 507, 523, 607, 624, 688, 924, 970
Hpy188III TCNNGA 4 cut(s) 337, 722, 803, 857
Hpy8I GTNNAC 4 cut(s) 43, 64, 451, 575
HpyAV CCTTC 5 cut(s) 361, 526, 685, 827, 839
HpyCH4III ACNGT 2 cut(s) 53, 167
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 6 cut(s) 19, 361, 752, 827, 1001, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 496, 551
HpyF3I CTNAG 5 cut(s) 407, 555, 588, 921, 1023
HpySE526I ACGT 1 cut(s) 80
Hsp92I GRCGYC 2 cut(s) 66, 116
Hsp92II CATG 4 cut(s) 10, 883, 920, 1015
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kzo9I GATC 5 cut(s) 33, 342, 777, 791, 848
LmnI GCTCC 6 cut(s) 235, 289, 315, 624, 676, 949
Lsp1109I GCAGC 4 cut(s) 31, 111, 411, 764
LweI GCATC 1 cut(s) 994
MabI ACCWGGT 1 cut(s) 975
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 25, 53, 905
MalI GATC 5 cut(s) 35, 344, 779, 793, 850
MboI GATC 5 cut(s) 33, 342, 777, 791, 848
MboII GAAGA 1 cut(s) 352
MflI RGATCY 2 cut(s) 791, 848
MhlI GDGCHC 3 cut(s) 205, 240, 629
MluCI AATT 2 cut(s) 319, 1028
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 4 cut(s) 98, 389, 527, 623
MmeI TCCRAC 3 cut(s) 192, 213, 602
Mph1103I ATGCAT 1 cut(s) 1009
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 1 cut(s) 990
Mva1269I GAATGC 2 cut(s) 964, 1007
MvaI CCWGG 3 cut(s) 208, 474, 977
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 124, 496, 551
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 7 cut(s) 188, 287, 429, 501, 512, 660, 947
NdeII GATC 5 cut(s) 33, 342, 777, 791, 848
NlaIII CATG 4 cut(s) 10, 883, 920, 1015
NlaIV GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 626, 657, 850
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 25, 905
NsiI ATGCAT 1 cut(s) 1009
PaqCI CACCTGC 1 cut(s) 13
PctI GAATGC 2 cut(s) 964, 1007
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 148, 1017
PflMI CCANNNNNTGG 1 cut(s) 788
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 6 cut(s) 21, 126, 141, 250, 426, 754
PleI GAGTC 4 cut(s) 98, 388, 526, 622
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 4 cut(s) 98, 388, 526, 622
Psp6I CCWGG 3 cut(s) 206, 472, 975
PspEI GGTNACC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 3 cut(s) 206, 472, 975
PspN4I GGNNCC 9 cut(s) 117, 204, 237, 291, 471, 504, 626, 657, 850
PspPI GGNCC 4 cut(s) 295, 503, 656, 758
PsuI RGATCY 2 cut(s) 791, 848
RsaI GTAC 2 cut(s) 478, 698
RsaNI GTAC 2 cut(s) 477, 697
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 6 cut(s) 20, 125, 140, 249, 425, 753
Sau3AI GATC 5 cut(s) 33, 342, 777, 791, 848
Sau96I GGNCC 4 cut(s) 295, 503, 656, 758
SchI GAGTC 4 cut(s) 98, 389, 527, 623
SduI GDGCHC 3 cut(s) 205, 240, 629
SexAI ACCWGGT 1 cut(s) 975
SfaNI GCATC 1 cut(s) 994
SfoI GGCGCC 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 3 cut(s) 295, 503, 656
SmlI CTYRAG 2 cut(s) 729, 801
SmoI CTYRAG 2 cut(s) 729, 801
Sse9I AATT 2 cut(s) 319, 1028
SspDI GGCGCC 1 cut(s) 115
TaaI ACNGT 2 cut(s) 53, 167
TaiI ACGT 1 cut(s) 83
TaqI TCGA 4 cut(s) 257, 438, 567, 776
TasI AATT 2 cut(s) 319, 1028
TauI GCSGC 2 cut(s) 142, 251
TfiI GAWTC 2 cut(s) 148, 1017
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 2 cut(s) 25, 905
TseI GCWGC 4 cut(s) 19, 124, 424, 752
Tsp45I GTSAC 2 cut(s) 25, 905
TspDTI ATGAA 1 cut(s) 1000
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 788
VpaK11BI GGWCC 3 cut(s) 295, 503, 656
XmiI GTMKAC 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.