Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

50852216 .. 50854940

Gene Structure 2725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G024910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTCATGGCCTTGGAGTTCGAGCAGCAGCATCAGCGGCAGTTGAGTCTCACCACCAACCCCGTTGACGGCGACACTAACGGCGTCGACGCTGCGGCCGGGCGAGCCTCAGCCGAGGCCGGGGATGACTCCAGCAAGGCGCCCAGGCTGCCGCGGTGGACCCGGCAGGAGATTCTGGTGCTGATAAAGGGCAAGAGGGCGGCGGAGAGCCGGGGCGGCGGCGGGAGGACGGCCAGGTCGGAGTTCGGGTCGGGTCAGGTGGAGCCGAAATGGGCCGCCGTGTCGTCGTACTGCAAGAAGCACGGGGTGAACCGCGGGCCGGTCCAGTGCCGGAAGAGGTGGAGCAATTTGGCCGGCGACTTTAAGAAGATCAGGGAGTGGGAGGCGCAGAGGAAGGACGAAACGGAGTCGTTTTGGGTGATGAGGAACGATTTGCGGAGGGAGAGAAAGCTGCCGGGGTTTTTTGATAAAGAGGTTTATGATATAATGGAGGCCGTTTCCGGCGCCGCCGCCGCCGCTCCGGTTACGCTGGCTCTGGCTCCGCCGCCGCTGATGGTATCGGAGGCCGAGAACAACCTGAAGGAGGGTCTGACCGACGAGGTGGAGAAGCTATTTGACAGCAGACAGGGGCCCACTGACGACGGGTTGTTTTCGGACTACGAGCAAGACGAGTCGGGTCGGAGCCCCGATAAGGAAGTCCGGCTCAAAAGCCCCACCGCGATTCCAGCTCCTTTGCCAATATCAGGTGATTCACACTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

254

Amino Acids

28.03

Weight (kDa)

5.62

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	52 - 142	2.2e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccB1I	GGYRCC	2 cut(s)	139, 503
AccBSI	CCGCTC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	3 cut(s)	154, 315, 719
AcoI	YGGCCR	3 cut(s)	96, 231, 351
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	3 cut(s)	84, 140, 504
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 743
AjnI	CCWGG	2 cut(s)	143, 233
AluBI	AGCT	3 cut(s)	451, 610, 728
AluI	AGCT	3 cut(s)	451, 610, 728
Alw26I	GTCTC	1 cut(s)	53
ApaI	GGGCCC	1 cut(s)	633
ApeKI	GCWGC	5 cut(s)	25, 28, 92, 148, 451
AspLEI	GCGC	3 cut(s)	142, 388, 506
AspS9I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
AsuC2I	CCSGG	5 cut(s)	100, 121, 163, 212, 456
AsuHPI	GGTGA	4 cut(s)	43, 319, 430, 758
AvaII	GGWCC	2 cut(s)	159, 322
BaeGI	GKGCMC	1 cut(s)	633
BanI	GGYRCC	2 cut(s)	139, 503
BanII	GRGCYC	2 cut(s)	633, 686
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	5 cut(s)	37, 40, 79, 135, 438
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	5 cut(s)	85, 97, 246, 263, 479
BciT130I	CCWGG	2 cut(s)	145, 235
BcnI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
BcoDI	GTCTC	1 cut(s)	53
BfoI	RGCGCY	2 cut(s)	143, 507
BglI	GCCNNNNNGGC	1 cut(s)	216
Bme1390I	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
Bme18I	GGWCC	2 cut(s)	159, 322
BmgT120I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
BmiI	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
BmrFI	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	109
BpuMI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
BsaHI	GRCGYC	3 cut(s)	84, 140, 504
BsaJI	CCNNGG	8 cut(s)	12, 114, 120, 143, 152, 211, 313, 455
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 743
Bse118I	RCCGGY	2 cut(s)	319, 353
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	145, 235
BseDI	CCNNGG	8 cut(s)	12, 114, 120, 143, 152, 211, 313, 455
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 743
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	633
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	37, 40, 79, 135, 438
Bsh1236I	CGCG	3 cut(s)	154, 315, 719
Bsh1285I	CGRYCG	1 cut(s)	99
BshNI	GGYRCC	2 cut(s)	139, 503
BsiEI	CGRYCG	1 cut(s)	99
BslI	CCNNNNNNNGG	6 cut(s)	68, 120, 319, 583, 691, 743
BsmAI	GTCTC	1 cut(s)	53
Bsp120I	GGGCCC	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	633, 686
Bsp143I	GATC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	3 cut(s)	154, 315, 719
BspLI	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
BspT107I	GGYRCC	2 cut(s)	139, 503
BsrBI	CCGCTC	1 cut(s)	518
BsrFI	RCCGGY	2 cut(s)	319, 353
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	2 cut(s)	319, 353
BssECI	CCNNGG	8 cut(s)	12, 114, 120, 143, 152, 211, 313, 455
BssMI	GATC	1 cut(s)	369
BssNI	GRCGYC	3 cut(s)	84, 140, 504
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	145, 235
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	3 cut(s)	84, 140, 504
BstC8I	GCNNGC	4 cut(s)	105, 317, 355, 531
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	2 cut(s)	152, 313
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	3 cut(s)	154, 315, 719
BstH2I	RGCGCY	2 cut(s)	143, 507
BstHHI	GCGC	3 cut(s)	142, 388, 506
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	369
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
BstNI	CCWGG	2 cut(s)	145, 235
BstSCI	CCNGG	7 cut(s)	98, 119, 143, 161, 210, 233, 454
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	3 cut(s)	154, 315, 719
BstV1I	GCAGC	5 cut(s)	37, 40, 79, 135, 438
BstZI	CGGCCG	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	152, 313
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	332, 633
Cac8I	GCNNGC	4 cut(s)	105, 317, 355, 531
CfoI	GCGC	3 cut(s)	142, 388, 506
Cfr10I	RCCGGY	2 cut(s)	319, 353
Cfr13I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
Cfr42I	CCGCGG	2 cut(s)	155, 316
CseI	GACGC	2 cut(s)	73, 98
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	7
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	109
DinI	GGCGCC	2 cut(s)	141, 505
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraIII	CACNNNGTG	1 cut(s)	307
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	3 cut(s)	96, 231, 351
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	2 cut(s)	218, 531
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	2 cut(s)	633, 686
Eco47I	GGWCC	2 cut(s)	159, 322
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	143, 233
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	633, 686
EgeI	GGCGCC	2 cut(s)	141, 505
EheI	GGCGCC	2 cut(s)	141, 505
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 480, 485
FatI	CATG	1 cut(s)	6
FauI	CCCGC	2 cut(s)	215, 308
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	633, 686
GlaI	GCGC	3 cut(s)	141, 387, 505
GsuI	CTGGAG	1 cut(s)	115
HaeII	RGCGCY	2 cut(s)	143, 507
HgaI	GACGC	2 cut(s)	73, 98
HhaI	GCGC	3 cut(s)	142, 388, 506
Hin1I	GRCGYC	3 cut(s)	84, 140, 504
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	3 cut(s)	140, 386, 504
HinP1I	GCGC	3 cut(s)	140, 386, 504
HincII	GTYRAC	2 cut(s)	67, 88
HindII	GTYRAC	2 cut(s)	67, 88
HinfI	GANTC	7 cut(s)	46, 128, 172, 407, 671, 721, 749
HphI	GGTGA	4 cut(s)	43, 319, 430, 758
Hpy166II	GTNNAC	4 cut(s)	67, 88, 159, 310
Hpy188I	TCNGA	5 cut(s)	241, 562, 591, 655, 681
Hpy8I	GTNNAC	4 cut(s)	67, 88, 159, 310
Hpy99I	CGWCG	5 cut(s)	89, 92, 289, 599, 644
HpyAV	CCTTC	2 cut(s)	388, 574
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
HpyF3I	CTNAG	1 cut(s)	109
Hsp92I	GRCGYC	3 cut(s)	84, 140, 504
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	3 cut(s)	140, 386, 504
KasI	GGCGCC	2 cut(s)	139, 503
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	2 cut(s)	155, 316
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	6 cut(s)	262, 342, 523, 544, 681, 733
Lsp1109I	GCAGC	5 cut(s)	37, 40, 79, 135, 438
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	371
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	346, 379
MhlI	GDGCHC	2 cut(s)	633, 686
MluCI	AATT	1 cut(s)	346
Mly113I	GGCGCC	2 cut(s)	140, 504
MlyI	GAGTC	4 cut(s)	55, 122, 416, 680
MmeI	TCCRAC	2 cut(s)	219, 659
MroNI	GCCGGC	1 cut(s)	353
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	4 cut(s)	37, 154, 315, 550
MspR9I	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
MvaI	CCWGG	2 cut(s)	145, 235
MvnI	CGCG	3 cut(s)	154, 315, 719
MwoI	GCNNNNNNNGC	8 cut(s)	34, 37, 104, 148, 216, 512, 515, 725
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	2 cut(s)	140, 504
NciI	CCSGG	5 cut(s)	100, 121, 163, 212, 456
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
NmeAIII	GCCGAG	2 cut(s)	139, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	172, 721, 749
PleI	GAGTC	4 cut(s)	54, 122, 415, 679
PluTI	GGCGCC	2 cut(s)	143, 507
PpsI	GAGTC	4 cut(s)	54, 122, 415, 679
Psp6I	CCWGG	2 cut(s)	143, 233
PspGI	CCWGG	2 cut(s)	143, 233
PspN4I	GGNNCC	8 cut(s)	141, 161, 264, 505, 540, 630, 631, 683
PspOMI	GGGCCC	1 cut(s)	629
PspPI	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacII	CCGCGG	2 cut(s)	155, 316
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	6 cut(s)	159, 273, 317, 322, 629, 630
SchI	GAGTC	4 cut(s)	55, 122, 416, 680
ScrFI	CCNGG	7 cut(s)	100, 121, 145, 163, 212, 235, 456
SduI	GDGCHC	2 cut(s)	633, 686
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	2 cut(s)	141, 505
Sfr303I	CCGCGG	2 cut(s)	155, 316
SgrBI	CCGCGG	2 cut(s)	155, 316
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	2 cut(s)	159, 322
Sse9I	AATT	1 cut(s)	346
SspDI	GGCGCC	2 cut(s)	139, 503
StyD4I	CCNGG	7 cut(s)	98, 119, 143, 161, 210, 233, 454
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	2 cut(s)	21, 87
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	172, 721, 749
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	332, 640
TseI	GCWGC	5 cut(s)	25, 28, 92, 148, 451
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	2 cut(s)	332, 640
VpaK11BI	GGWCC	2 cut(s)	159, 322
XagI	CCTNNNNNAGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.