Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006660

Physical Location & Seq

Genomic Coordinates Forward (+)

24406733 .. 24414223

Gene Structure 7491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTCTTCAACGCCGGCGGCCTCTCTGGCCTTTCTGGGCTCCGTCTCTTACTCACTATCTACGTTGTCGCTTTCTACACTGGAGTCGTCGCCTCTGCCATCACTAAACAGCTCTATAAGCCACCTTCAATTCCCGAGATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCAGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCAGAATTCTCATTCGCAACTGGATAGGGAGCAGAGGAAAGAACATTCTGATAGCTTAATTGCTGTTCTTAACAAGCTTGCAGATTCTTTCATGAGAATCGCCGATAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071216 GO:0071219 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

128

Amino Acids

14.43

Weight (kDa)

6.74

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33550
fragaria_vesca	FvH4_4g22720 FvH4_4g22720
malus_domestica	MD13G1130000.v1.1 MD16G1130200.v1.1
prunus_persica	Prupe.1G216100_v2.0.a1
pyrus_communis	pycom13g11310 pycom16g11090
rosa_chinensis	RchiOBHm_Chr2g0112661 RchiOBHm_Chr4g0428941
rosa_laevigata	RLG00000007112
rosa_multiflora	Rmu_sc0000816.1_g000016 Rmu_sc0001700.1_g000023 Rmu_sc0007311.1_g000003
rosa_roxburghii	Rroxscaffold_3G00266460 Rroxscaffold_4G00298040 Rroxscaffold_5G00370610
rosa_rugosa	Rorug04G0230900 Rorug04G0230900
rosa_samantha	Rh1DG133600 Rh3CG251300 Rh4BG293200 Rh4CG309100 Rh4DG290300 Rh6CG208200
rosa_wichuraiana	Rw4G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	277
AfeI	AGCGCT	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	10, 129
AluBI	AGCT	3 cut(s)	112, 327, 349
AluI	AGCT	3 cut(s)	112, 327, 349
Alw26I	GTCTC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	173
AoxI	GGCC	2 cut(s)	19, 28
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	42
BccI	CCATC	3 cut(s)	107, 133, 179
BcoDI	GTCTC	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	85, 297
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	2 cut(s)	85, 297
BseRI	GAGGAG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	21, 30
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	21, 30
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	21, 30
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	85, 297
BssAI	RCCGGY	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	16, 255, 351
BstDEI	CTNAG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 118
BsuRI	GGCC	2 cut(s)	21, 30
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	16, 255, 351
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	14
CviAII	CATG	2 cut(s)	232, 364
CviJI	RGCY	9 cut(s)	21, 30, 40, 112, 121, 257, 272, 327, 349
CviKI_1	RGCY	9 cut(s)	21, 30, 40, 112, 121, 257, 272, 327, 349
DdeI	CTNAG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	42
Eco47III	AGCGCT	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	2 cut(s)	235, 367
FaiI	YATR	3 cut(s)	117, 233, 365
FatI	CATG	2 cut(s)	231, 363
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	19
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	21, 30
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	235, 367
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	84, 214, 356, 369
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	276, 322
Hpy188III	TCNNGA	3 cut(s)	134, 155, 364
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	179, 211, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 118
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	235, 367
HspAI	GCGC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	45, 301
LpnPI	CCDG	6 cut(s)	12, 21, 28, 66, 239, 278
MaeII	ACGT	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	129, 277, 330
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	7 cut(s)	32, 103, 184, 187, 220, 262, 300
MreI	CGCCGGCG	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	2 cut(s)	329, 342
MspI	CCGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	27, 118
NaeI	GCCGGC	1 cut(s)	16
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	2 cut(s)	235, 367
NlaIV	GGNNCC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	3 cut(s)	214, 356, 369
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	329, 342
SatI	GCNGC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	66, 114, 127, 231, 329, 351
SfiI	GGCCNNNNNGGCC	1 cut(s)	27
SgrAI	CRCCGGYG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	129, 277, 330
SsiI	CCGC	1 cut(s)	18
TaiI	ACGT	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	129, 277, 330
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	214, 356, 369
Tru1I	TTAA	2 cut(s)	329, 342
Tru9I	TTAA	2 cut(s)	329, 342
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.