AT2G34260

WD40 repeats

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14465516 .. 14468547
3032 bp
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UTR
Exon/CDS
Intron
AT2G34260.1

Sequence Viewer

Length: 1062 bp
ATGGAGATCGATTTGGGAGCTAACGCGTTTGGTATCGACTTCCATCCATCGACGAATCTAGTAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCTTCACTTGTCAGGGAACGTAAAGTTCGTGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATTGATGATGGCCAAAGAATCGTCACTGCTTCAGCTGATTGTTCAATTCTAGCAACTGATGTAGAGACTGGTGCGCAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTGATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGATTTGGGATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGCATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCTGTCTGTAATCTTAGAACGAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACTACTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTACTCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGCTCCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGATAATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTCACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCACAGCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGTCAACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGACCTTGACAATGATCCTTCCAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAGCGAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAG

Protein Analysis

353

Amino Acids

38.43

Weight (kDa)

4.87

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 2 - 293 9.3e-101 WDR55
WD40_WDHD1_1st PF24817 5 - 136 5.3e-08 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 8 - 92 7.8e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 12 - 161 4.9e-20 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 12 - 92 2.2e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 12 - 183 1.3e-18 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 12 - 205 2e-22 WDR5 beta-propeller domain
WD40_Gbeta PF25391 13 - 196 1.6e-17 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 16 - 104 8.8e-06 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 17 - 170 3.1e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 18 - 169 8.1e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 35 - 169 3.4e-12 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 50 - 293 2e-28 THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 64 - 169 3.8e-07 WDR90/POC16, second beta-propeller
EIF3I PF24805 83 - 192 2.8e-06 EIF3I
Beta-prop_WDR3_1st PF25173 91 - 205 1.1e-12 WDR3 first beta-propeller domain
Beta-prop_Vps41 PF23411 95 - 249 1.9e-07 Vps42 beta-propeller
Beta-prop_WDR3_2nd PF25172 101 - 211 2e-08 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 106 - 206 8.9e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 111 - 290 6.3e-06 WDR36/Utp21 first beta-propeller
Beta-prop_EML PF23409 112 - 205 9.9e-07 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 133 - 294 7.9e-06 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 163 - 294 3.7e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 163 - 293 5.7e-07 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 183 - 292 3.8e-06 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc16I TGCGCA 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 244
AccII CGCG 1 cut(s) 26
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 3 cut(s) 82, 187, 565
AcsI RAATTY 3 cut(s) 521, 664, 824
AcuI CTGAAG 5 cut(s) 192, 312, 549, 704, 878
AfaI GTAC 1 cut(s) 598
AfeI AGCGCT 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 222, 441, 628
AluBI AGCT 8 cut(s) 20, 65, 167, 212, 448, 688, 842, 923
AluI AGCT 8 cut(s) 20, 65, 167, 212, 448, 688, 842, 923
Alw26I GTCTC 4 cut(s) 77, 236, 308, 459
AlwI GGATC 1 cut(s) 965
Aor51HI AGCGCT 1 cut(s) 374
AoxI GGCC 3 cut(s) 82, 187, 565
ApeKI GCWGC 5 cut(s) 65, 345, 636, 923, 993
ApoI RAATTY 3 cut(s) 521, 664, 824
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 879
AspLEI GCGC 2 cut(s) 253, 375
AspS9I GGNCC 2 cut(s) 505, 958
AvaII GGWCC 2 cut(s) 505, 958
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 2 cut(s) 84, 189
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BauI CACGAG 2 cut(s) 278, 401
BbsI GAAGAC 2 cut(s) 936, 975
BbvI GCAGC 5 cut(s) 52, 332, 648, 910, 1005
BccI CCATC 6 cut(s) 51, 55, 74, 179, 944, 949
BceAI ACGGC 1 cut(s) 552
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 4 cut(s) 77, 236, 308, 459
BfaI CTAG 5 cut(s) 59, 227, 449, 872, 884
BfmI CTRYAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 244
BfuI GTATCC 1 cut(s) 355
BglII AGATCT 1 cut(s) 799
BisI GCNGC 5 cut(s) 66, 346, 637, 924, 994
BlsI GCNGC 5 cut(s) 67, 347, 638, 925, 995
Bme18I GGWCC 2 cut(s) 505, 958
BmgT120I GGNCC 2 cut(s) 505, 958
BmiI GGNNCC 1 cut(s) 869
BmsI GCATC 5 cut(s) 100, 274, 440, 664, 923
BpiI GAAGAC 2 cut(s) 936, 975
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 2 cut(s) 9, 78
BsaI GGTCTC 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 250, 715
BseCI ATCGAT 2 cut(s) 9, 78
BseGI GGATG 4 cut(s) 43, 289, 719, 960
BseMII CTCAG 4 cut(s) 123, 303, 527, 602
BseNI ACTGG 2 cut(s) 250, 715
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 5 cut(s) 52, 332, 648, 910, 1005
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 3 cut(s) 84, 189, 567
BshVI ATCGAT 2 cut(s) 9, 78
BsiEI CGRYCG 1 cut(s) 643
BslFI GGGAC 1 cut(s) 484
BsmAI GTCTC 4 cut(s) 77, 236, 308, 459
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 2 cut(s) 277, 916
BsnI GGCC 3 cut(s) 84, 189, 567
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 5 cut(s) 6, 640, 652, 799, 970
BspANI GGCC 3 cut(s) 84, 189, 567
BspCNI CTCAG 4 cut(s) 122, 304, 526, 601
BspDI ATCGAT 2 cut(s) 9, 78
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 2 cut(s) 385, 844
BspLI GGNNCC 1 cut(s) 869
BspMAI CTGCAG 1 cut(s) 928
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 250, 715
BssMI GATC 5 cut(s) 6, 640, 652, 799, 970
BssSI CACGAG 2 cut(s) 278, 401
Bst2BI CACGAG 2 cut(s) 278, 401
Bst4CI ACNGT 2 cut(s) 851, 935
Bst6I CTCTTC 1 cut(s) 870
BstDEI CTNAG 5 cut(s) 109, 312, 491, 513, 588
BstF5I GGATG 4 cut(s) 43, 289, 719, 960
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 2 cut(s) 253, 375
BstKTI GATC 5 cut(s) 9, 643, 655, 802, 973
BstMAI GTCTC 4 cut(s) 77, 236, 308, 459
BstMBI GATC 5 cut(s) 6, 640, 652, 799, 970
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 2 cut(s) 257, 920
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 5 cut(s) 52, 332, 648, 910, 1005
BstV2I GAAGAC 2 cut(s) 936, 975
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 2 cut(s) 9, 78
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 3 cut(s) 84, 189, 567
BsuTUI ATCGAT 2 cut(s) 9, 78
BtsCI GGATG 4 cut(s) 43, 289, 719, 960
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 708, 940
BveI ACCTGC 1 cut(s) 244
CciI TCATGA 2 cut(s) 385, 844
CfoI GCGC 2 cut(s) 253, 375
Cfr13I GGNCC 2 cut(s) 505, 958
ClaI ATCGAT 2 cut(s) 9, 78
Csp6I GTAC 1 cut(s) 597
CviAII CATG 5 cut(s) 386, 421, 615, 815, 845
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 5 cut(s) 109, 312, 491, 513, 588
DpnI GATC 5 cut(s) 8, 642, 654, 801, 972
DpnII GATC 5 cut(s) 6, 640, 652, 799, 970
EaeI YGGCCR 3 cut(s) 82, 187, 565
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 505, 958
Eco47III AGCGCT 1 cut(s) 374
Eco57I CTGAAG 5 cut(s) 192, 312, 549, 704, 878
EcoT22I ATGCAT 1 cut(s) 916
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 5 cut(s) 389, 424, 618, 818, 848
FaqI GGGAC 1 cut(s) 484
FatI CATG 5 cut(s) 385, 420, 614, 814, 844
Fnu4HI GCNGC 5 cut(s) 66, 346, 637, 924, 994
FokI GGATG 4 cut(s) 30, 296, 726, 967
Fsp4HI GCNGC 5 cut(s) 66, 346, 637, 924, 994
FspBI CTAG 5 cut(s) 59, 227, 449, 872, 884
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 2 cut(s) 252, 374
GluI GCNGC 5 cut(s) 66, 346, 637, 924, 994
GsuI CTGGAG 1 cut(s) 939
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 3 cut(s) 84, 189, 567
HhaI GCGC 2 cut(s) 253, 375
Hin1II CATG 5 cut(s) 389, 424, 618, 818, 848
Hin6I GCGC 2 cut(s) 251, 373
HinP1I GCGC 2 cut(s) 251, 373
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HinfI GANTC 8 cut(s) 55, 107, 113, 155, 195, 437, 759, 880
Hpy166II GTNNAC 1 cut(s) 901
Hpy188I TCNGA 5 cut(s) 112, 436, 520, 529, 591
Hpy188III TCNNGA 7 cut(s) 266, 278, 330, 386, 845, 884, 918
Hpy8I GTNNAC 1 cut(s) 901
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 881, 984
HpyCH4III ACNGT 2 cut(s) 851, 935
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 8 cut(s) 91, 260, 398, 431, 636, 914, 926, 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 920
HpyF3I CTNAG 5 cut(s) 109, 312, 491, 513, 588
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 5 cut(s) 389, 424, 618, 818, 848
HspAI GCGC 2 cut(s) 251, 373
Kzo9I GATC 5 cut(s) 6, 640, 652, 799, 970
LmnI GCTCC 3 cut(s) 17, 664, 920
LpnPI CCDG 9 cut(s) 54, 112, 231, 239, 315, 402, 696, 891, 903
Lsp1109I GCAGC 5 cut(s) 52, 332, 648, 910, 1005
LweI GCATC 5 cut(s) 100, 274, 440, 664, 923
MaeI CTAG 5 cut(s) 59, 227, 449, 872, 884
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 5 cut(s) 199, 307, 454, 777, 935
MalI GATC 5 cut(s) 8, 642, 654, 801, 972
MboI GATC 5 cut(s) 6, 640, 652, 799, 970
MboII GAAGA 7 cut(s) 108, 542, 571, 809, 887, 941, 975
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 2 cut(s) 84, 189
MluCI AATT 6 cut(s) 222, 521, 664, 729, 824, 1042
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 2 cut(s) 84, 189
MlyI GAGTC 2 cut(s) 101, 164
MmeI TCCRAC 1 cut(s) 721
MnlI CCTC 4 cut(s) 274, 397, 688, 993
Mox20I TGGCCA 2 cut(s) 84, 189
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 1 cut(s) 879
MscI TGGCCA 2 cut(s) 84, 189
MseI TTAA 4 cut(s) 291, 303, 351, 393
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 2 cut(s) 84, 189
MspA1I CMGCKG 1 cut(s) 212
Mva1269I GAATGC 2 cut(s) 277, 916
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 257, 920
NdeII GATC 5 cut(s) 6, 640, 652, 799, 970
NlaIII CATG 5 cut(s) 389, 424, 618, 818, 848
NlaIV GGNNCC 1 cut(s) 869
NmuCI GTSAC 3 cut(s) 199, 777, 935
NsbI TGCGCA 1 cut(s) 252
NsiI ATGCAT 1 cut(s) 916
PagI TCATGA 2 cut(s) 385, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PctI GAATGC 2 cut(s) 277, 916
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 6 cut(s) 55, 113, 195, 437, 759, 880
PflFI GACNNNGTC 1 cut(s) 475
PkrI GCNGC 5 cut(s) 67, 347, 638, 925, 995
Ple19I CGATCG 1 cut(s) 643
PleI GAGTC 2 cut(s) 101, 163
PpsI GAGTC 2 cut(s) 101, 163
PshBI ATTAAT 1 cut(s) 303
PsiI TTATAA 1 cut(s) 554
PspN4I GGNNCC 1 cut(s) 869
PspPI GGNCC 2 cut(s) 505, 958
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 475
PvuI CGATCG 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 4 cut(s) 291, 303, 351, 393
SatI GCNGC 5 cut(s) 66, 346, 637, 924, 994
Sau3AI GATC 5 cut(s) 6, 640, 652, 799, 970
Sau96I GGNCC 2 cut(s) 505, 958
SchI GAGTC 2 cut(s) 101, 164
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 5 cut(s) 100, 274, 440, 664, 923
SfcI CTRYAG 1 cut(s) 924
SinI GGWCC 2 cut(s) 505, 958
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 6 cut(s) 222, 521, 664, 729, 824, 1042
SspMI CTAG 5 cut(s) 59, 227, 449, 872, 884
TaaI ACNGT 2 cut(s) 851, 935
TaiI ACGT 1 cut(s) 136
TaqI TCGA 6 cut(s) 9, 36, 50, 78, 690, 795
TasI AATT 6 cut(s) 222, 521, 664, 729, 824, 1042
TfiI GAWTC 6 cut(s) 55, 113, 195, 437, 759, 880
Tru1I TTAA 4 cut(s) 291, 303, 351, 393
Tru9I TTAA 4 cut(s) 291, 303, 351, 393
TscAI CASTG 3 cut(s) 208, 715, 940
TseFI GTSAC 3 cut(s) 199, 777, 935
TseI GCWGC 5 cut(s) 65, 345, 636, 923, 993
Tsp45I GTSAC 3 cut(s) 199, 777, 935
TspDTI ATGAA 5 cut(s) 166, 458, 549, 572, 603
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 3 cut(s) 208, 715, 940
Tth111I GACNNNGTC 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 505, 958
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 3 cut(s) 521, 664, 824
XbaI TCTAGA 1 cut(s) 883
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 5 cut(s) 59, 227, 449, 872, 884
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.