Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

31560190 .. 31563392

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAATCAACTTGAGGAAATTGGCGTTTGACCTCGATTTTCATCCATCGCAGCAATTAGTGACTACAGGTCTCATCGATGGCCACCTTCACTTGTATCGATATTCATCTGGTGGTTCACTACCTGAAATTCATGCACATAGCGAATCTTGCAGAGCTGCTCGGTTCTTCAACGGTGGCAGTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCAATATGTGGAAACTGCGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGAAAGCTGTATTAAGGTCTGGGATACCAGACAACGATCTTGCTGCAATTCCTTTAATGCTCATCAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAACTCCTGGGGACTAGTGGGGATGTAACTCTGTCTGTTTGCAATCTTCAAAGAAATAAGGTCCTAGATGAATCTGAGTTTTCAGAAGACGAGCTACTGTCTGTTGTTATCATGAAGAATGGTCAGAAAGTTATTTGCAGCTCACAAACTGGGAATATATTGTATGATCGTTGTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTTAAGCTTGATGAAGATAGACTTATTGCTGGATCTGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAGTCATCCAACCAATTGCAGAGCACTCAGAATATCCGGTAGAGCGTCTTGCTTTTTCTCATGATAAAAAGTTTCTGGGCAGCATAGCACATGATCAGATGTTAAAGCTCTGGGATATGGATGATATATTGCAAGGCTCTGGAAATACTTCAAGGACTCAAGCAACTGTGGGGGACAATGATAGTGATGAGATGGATACAGATATTAATACTCCAAAGTCTAGAAAAGGAACAAAGAGAAAAAATGCAAGCAAAGATCATGTTATGGGTTCACAGAACTTTTTTGCTGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

325

Amino Acids

35.75

Weight (kDa)

5.09

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 268	1.5e-66	WDR55
WD40_CDC20-Fz	PF24807	12 - 180	5.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	90 - 186	4.6e-10	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	90 - 182	4.6e-11	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	90 - 169	1.9e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	91 - 268	4.3e-15	THOC3 beta-propeller domain
WD40_Prp19	PF24814	93 - 175	5.9e-08	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	129, 589
AgsI	TTSAA	3 cut(s)	172, 449, 834
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	7 cut(s)	158, 300, 389, 493, 540, 613, 790
AluI	AGCT	7 cut(s)	158, 300, 389, 493, 540, 613, 790
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	3 cut(s)	77, 204, 638
AlwI	GGATC	1 cut(s)	646
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	52, 158, 336, 537, 762
ApoI	RAATTY	2 cut(s)	129, 589
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	1 cut(s)	829
AspS9I	GGNCC	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	708
BbvI	GCAGC	5 cut(s)	64, 145, 323, 549, 774
BccI	CCATC	3 cut(s)	55, 74, 868
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	2 cut(s)	310, 871
BclI	TGATCA	1 cut(s)	775
BcoDI	GTCTC	3 cut(s)	77, 204, 638
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	414, 464, 662, 903
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	2 cut(s)	310, 871
BglI	GCCNNNNNGGC	1 cut(s)	666
BisI	GCNGC	5 cut(s)	53, 159, 337, 538, 763
BlsI	GCNGC	5 cut(s)	54, 160, 338, 539, 764
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	460
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	460
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	229, 278, 589
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	2 cut(s)	186, 306
BpuEI	CTTGAG	2 cut(s)	34, 825
Bsa29I	ATCGAT	2 cut(s)	78, 100
BsaBI	GATNNNNATC	2 cut(s)	42, 106
BsaI	GGTCTC	3 cut(s)	77, 204, 638
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	2 cut(s)	647, 718
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 353, 383
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	2 cut(s)	42, 106
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	2 cut(s)	78, 100
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	4 cut(s)	43, 427, 687, 808
BseJI	GATNNNNATC	2 cut(s)	42, 106
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	465, 633, 723
BseNI	ACTGG	1 cut(s)	553
BseXI	GCAGC	5 cut(s)	64, 145, 323, 549, 774
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	2 cut(s)	78, 100
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	648, 719
BslFI	GGGAC	2 cut(s)	424, 869
BsmAI	GTCTC	3 cut(s)	77, 204, 638
BsmFI	GGGAC	2 cut(s)	424, 869
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	3 cut(s)	77, 204, 638
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	3 cut(s)	466, 634, 722
BspDI	ATCGAT	2 cut(s)	78, 100
BspHI	TCATGA	2 cut(s)	510, 742
BspPI	GGATC	1 cut(s)	646
BspTNI	GGTCTC	3 cut(s)	77, 204, 638
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	176, 498, 850
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	3 cut(s)	474, 642, 709
BstF5I	GGATG	4 cut(s)	43, 427, 687, 808
BstKTI	GATC	6 cut(s)	332, 568, 580, 641, 778, 940
BstMAI	GTCTC	3 cut(s)	77, 204, 638
BstMBI	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 666
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	64, 145, 323, 549, 774
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
Bsu15I	ATCGAT	2 cut(s)	78, 100
BsuI	GTATCC	2 cut(s)	310, 871
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	2 cut(s)	78, 100
BtgZI	GCGATG	2 cut(s)	33, 252
BtsCI	GGATG	4 cut(s)	43, 427, 687, 808
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	931
CciI	TCATGA	2 cut(s)	510, 742
Cfr13I	GGNCC	1 cut(s)	460
ClaI	ATCGAT	2 cut(s)	78, 100
CseI	GACGC	1 cut(s)	716
CviAII	CATG	6 cut(s)	134, 397, 511, 743, 773, 941
DdeI	CTNAG	3 cut(s)	474, 642, 709
DpnI	GATC	6 cut(s)	331, 567, 579, 640, 777, 939
DpnII	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
DriI	GACNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 204, 638
Eco47I	GGWCC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	6 cut(s)	137, 400, 514, 746, 776, 944
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	424, 869
FatI	CATG	6 cut(s)	133, 396, 510, 742, 772, 940
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	5 cut(s)	53, 159, 337, 538, 763
FokI	GGATG	4 cut(s)	30, 434, 674, 815
Fsp4HI	GCNGC	5 cut(s)	53, 159, 337, 538, 763
FspBI	CTAG	4 cut(s)	414, 464, 662, 903
GluI	GCNGC	5 cut(s)	53, 159, 337, 538, 763
GsuI	CTGGAG	2 cut(s)	186, 306
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	648, 719
HgaI	GACGC	1 cut(s)	716
Hin1II	CATG	6 cut(s)	137, 400, 514, 746, 776, 944
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	5 cut(s)	146, 392, 470, 684, 838
HpaII	CCGG	2 cut(s)	648, 719
Hpy166II	GTNNAC	2 cut(s)	119, 953
Hpy188I	TCNGA	7 cut(s)	373, 475, 484, 525, 643, 712, 780
Hpy188III	TCNNGA	7 cut(s)	203, 285, 359, 511, 743, 822, 903
Hpy8I	GTNNAC	2 cut(s)	119, 953
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	176, 498, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 666
HpyF3I	CTNAG	3 cut(s)	474, 642, 709
Hsp92II	CATG	6 cut(s)	137, 400, 514, 746, 776, 944
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
Lsp1109I	GCAGC	5 cut(s)	64, 145, 323, 549, 774
LweI	GCATC	3 cut(s)	229, 278, 589
MaeI	CTAG	4 cut(s)	414, 464, 662, 903
MaeIII	GTNAC	2 cut(s)	61, 424
MalI	GATC	6 cut(s)	331, 567, 579, 640, 777, 939
MboI	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
MboII	GAAGA	5 cut(s)	160, 437, 497, 526, 632
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	708
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	7 cut(s)	20, 56, 129, 213, 340, 589, 696
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	693, 832
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	3 cut(s)	9, 44, 292
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	829
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	5 cut(s)	306, 348, 609, 785, 888
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	648, 719
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	150, 666
NdeII	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
NlaIII	CATG	6 cut(s)	137, 400, 514, 746, 776, 944
NmuCI	GTSAC	1 cut(s)	61
PagI	TCATGA	2 cut(s)	510, 742
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	3 cut(s)	146, 392, 470
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	54, 160, 338, 539, 764
PleI	GAGTC	2 cut(s)	692, 832
PpsI	GAGTC	2 cut(s)	692, 832
PpuMI	RGGWCCY	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	460
PspPPI	RGGWCCY	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	638
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	389
SaqAI	TTAA	5 cut(s)	306, 348, 609, 785, 888
SatI	GCNGC	5 cut(s)	53, 159, 337, 538, 763
Sau3AI	GATC	6 cut(s)	329, 565, 577, 638, 775, 937
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	2 cut(s)	693, 832
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	3 cut(s)	229, 278, 589
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	13, 840
SmoI	CTYRAG	2 cut(s)	13, 840
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	7 cut(s)	20, 56, 129, 213, 340, 589, 696
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	4 cut(s)	414, 464, 662, 903
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	3 cut(s)	176, 498, 850
TaqI	TCGA	3 cut(s)	36, 78, 100
TasI	AATT	7 cut(s)	20, 56, 129, 213, 340, 589, 696
TfiI	GAWTC	3 cut(s)	146, 392, 470
Tru1I	TTAA	5 cut(s)	306, 348, 609, 785, 888
Tru9I	TTAA	5 cut(s)	306, 348, 609, 785, 888
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	5 cut(s)	52, 158, 336, 537, 762
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	8 cut(s)	32, 96, 122, 309, 413, 483, 527, 633
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	460
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	2 cut(s)	129, 589
XbaI	TCTAGA	1 cut(s)	902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	4 cut(s)	414, 464, 662, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.