Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

29042254 .. 29044054

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG160900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAAGAATGGTCAGAAAGTTATTTGCAGCTCACAAACTGGGAATATATTGTTGTATTCATGGGGTTGTTTCAAGGATTACAGTGATCGTTTTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTGAAGCTTGATGAAGATAGACTTATTGCTGAATCTGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAGTCATCCAGCCAATTGCAGAGCACTCAGAATATCCGGTAGAGCGTCTTGTTTTTTCTCATGACAAAAAGTTTCTGGGCAGCATAGCACATGATCAGATGTTAAAGGAACAAAGAGAAAAATGCAAGCAAAGATCATGTTATGGGTTCACACAACTTTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

122

Amino Acids

13.94

Weight (kDa)

6.28

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	1 - 103	1.1e-27	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	73, 130
AluBI	AGCT	2 cut(s)	30, 133
AluI	AGCT	2 cut(s)	30, 133
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	27, 282
ApoI	RAATTY	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	39, 294
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	2 cut(s)	28, 283
BlsI	GCNGC	2 cut(s)	29, 284
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	158
BsaWI	WCCGGW	2 cut(s)	167, 238
Bse1I	ACTGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	153, 243
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	39, 294
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	168, 239
BsmAI	GTCTC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	85, 97, 295, 335
BspCNI	CTCAG	2 cut(s)	154, 242
BspHI	TCATGA	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	4 cut(s)	85, 97, 295, 335
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	162, 229
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	88, 100, 298, 338
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	85, 97, 295, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	39, 294
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	262
CseI	GACGC	1 cut(s)	236
CviAII	CATG	4 cut(s)	60, 263, 293, 339
CviJI	RGCY	4 cut(s)	30, 133, 180, 214
CviKI_1	RGCY	4 cut(s)	30, 133, 180, 214
DdeI	CTNAG	2 cut(s)	162, 229
DpnI	GATC	4 cut(s)	87, 99, 297, 337
DpnII	GATC	4 cut(s)	85, 97, 295, 335
Eco31I	GGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	63, 266, 296, 342
FaiI	YATR	8 cut(s)	47, 61, 191, 264, 287, 294, 340, 345
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	4 cut(s)	59, 262, 292, 338
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	28, 283
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	28, 283
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	28, 283
HapII	CCGG	2 cut(s)	168, 239
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	4 cut(s)	63, 266, 296, 342
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	158, 204
HpaII	CCGG	2 cut(s)	168, 239
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	4 cut(s)	15, 163, 232, 300
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	27, 221, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	162, 229
Hsp92II	CATG	4 cut(s)	63, 266, 296, 342
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	85, 97, 295, 335
LpnPI	CCDG	5 cut(s)	24, 181, 224, 252, 263
Lsp1109I	GCAGC	2 cut(s)	39, 294
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	182
MalI	GATC	4 cut(s)	87, 99, 297, 337
MboI	GATC	4 cut(s)	85, 97, 295, 335
MboII	GAAGA	2 cut(s)	16, 152
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	2 cut(s)	109, 216
MlyI	GAGTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	305
MspI	CCGG	2 cut(s)	168, 239
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	4 cut(s)	85, 97, 295, 335
NlaIII	CATG	4 cut(s)	63, 266, 296, 342
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	29, 284
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	2 cut(s)	28, 283
Sau3AI	GATC	4 cut(s)	85, 97, 295, 335
SchI	GAGTC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	32, 135
SfaNI	GCATC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	109, 216
SspMI	CTAG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	2 cut(s)	109, 216
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	27, 282
TspDTI	ATGAA	3 cut(s)	17, 48, 153
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.