Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

38068657 .. 38069688

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAATAAACTTGGGGAAATTGGCGTTTGACCTCGATTTTCATCCATCGCAGCAATTAGTGACTACAGGTCTCATCGATGGCCACCTTCACTTGTATCGATATTCATCTGGTGGTTCACTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCAGAGCTGCTCGGTTCGTCAACGGTGGCAGTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCAATATGTGGAAACTGCGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGGTCTGGGATACCAGAAAACGATCTCGCTGCAATTCCTTTAATGCTCATCAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAACTCCTGGGAACTAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

144

Amino Acids

15.63

Weight (kDa)

6.35

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 140	1e-28	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AciI	CCGC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	82
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	2 cut(s)	170, 401
AluI	AGCT	2 cut(s)	170, 401
Alw26I	GTCTC	2 cut(s)	77, 216
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	52, 170, 348
AspS9I	GGNCC	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	64, 157, 335
BccI	CCATC	3 cut(s)	55, 74, 299
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	77, 216
BfaI	CTAG	2 cut(s)	426, 433
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	53, 171, 349
BlsI	GCNGC	3 cut(s)	54, 172, 350
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	429
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	241, 290
BpmI	CTGGAG	2 cut(s)	198, 318
Bsa29I	ATCGAT	2 cut(s)	78, 100
BsaBI	GATNNNNATC	2 cut(s)	42, 106
BsaI	GGTCTC	2 cut(s)	77, 216
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 365, 395
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	2 cut(s)	42, 106
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	2 cut(s)	78, 100
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	2 cut(s)	42, 106
BseMI	GCAATG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	64, 157, 335
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	2 cut(s)	78, 100
BsmAI	GTCTC	2 cut(s)	77, 216
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	2 cut(s)	77, 216
Bsp143I	GATC	1 cut(s)	341
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	2 cut(s)	78, 100
BspTNI	GGTCTC	2 cut(s)	77, 216
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	2 cut(s)	77, 216
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	64, 157, 335
Bsu15I	ATCGAT	2 cut(s)	78, 100
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	2 cut(s)	78, 100
BtgZI	GCGATG	2 cut(s)	33, 264
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	429
ClaI	ATCGAT	2 cut(s)	78, 100
CviAII	CATG	2 cut(s)	146, 409
CviJI	RGCY	4 cut(s)	84, 170, 312, 401
CviKI_1	RGCY	4 cut(s)	84, 170, 312, 401
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
DriI	GACNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	77, 216
Eco47I	GGWCC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	417
FaeI	CATG	2 cut(s)	149, 412
FaiI	YATR	6 cut(s)	147, 153, 238, 269, 389, 410
FatI	CATG	2 cut(s)	145, 408
Fnu4HI	GCNGC	3 cut(s)	53, 171, 349
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	53, 171, 349
FspBI	CTAG	2 cut(s)	426, 433
GluI	GCNGC	3 cut(s)	53, 171, 349
GsuI	CTGGAG	2 cut(s)	198, 318
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	149, 412
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	158, 404
Hpy166II	GTNNAC	2 cut(s)	119, 184
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	215, 297, 371
Hpy8I	GTNNAC	2 cut(s)	119, 184
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	5 cut(s)	149, 165, 233, 254, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	149, 412
Kzo9I	GATC	1 cut(s)	341
Lsp1109I	GCAGC	3 cut(s)	64, 157, 335
LweI	GCATC	2 cut(s)	241, 290
MaeI	CTAG	2 cut(s)	426, 433
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	4 cut(s)	20, 56, 225, 352
MluNI	TGGCCA	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	44, 302, 304
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	318, 360
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	162
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	2 cut(s)	149, 412
NmuCI	GTSAC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	158, 404
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	54, 172, 350
PpuMI	RGGWCCY	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	429
PspPPI	RGGWCCY	1 cut(s)	429
PsyI	GACNNNGTC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	318, 360
SatI	GCNGC	3 cut(s)	53, 171, 349
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	1 cut(s)	429
ScrFI	CCNGG	1 cut(s)	419
SetI	ASST	8 cut(s)	36, 73, 90, 127, 172, 324, 403, 431
SfaNI	GCATC	2 cut(s)	241, 290
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	429
Sse9I	AATT	4 cut(s)	20, 56, 225, 352
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	426, 433
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	36, 78, 100
TasI	AATT	4 cut(s)	20, 56, 225, 352
TfiI	GAWTC	2 cut(s)	158, 404
Tru1I	TTAA	2 cut(s)	318, 360
Tru9I	TTAA	2 cut(s)	318, 360
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	52, 170, 348
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	32, 96, 134, 425
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	426, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.