Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

15920541 .. 15921721

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAAGAAGCAGAGTCTCCTCCTCGTCATCTTTTCGCTCTTTCTTTTCCTCGTCATCTCATCACATGCTCGTCATCTTCCACATGACCAAGGCTCATCAACTGCCGCTGCAGATCATGACATCATGGACCTAATGGGATCGGAGGAATGCCATGAGAAAGATGAAGAGTGTCTACAGAGAAGGATGATTGTTGAAGCTCACCTAGATTATATCTACACCCAGCACCAGAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

5.7

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSK	PF06404	21 - 78	1.6e-17	Phytosulfokine precursor protein (PSK)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	127
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbvI	GCAGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	108, 173
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	8, 11
BseXI	GCAGC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	112, 137
BspACI	CCGC	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	112, 137
BssT1I	CCWWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	115, 140
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	112, 137
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	108, 173
BstV1I	GCAGC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	189
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	5 cut(s)	65, 83, 116, 124, 152
CviJI	RGCY	3 cut(s)	93, 197, 232
CviKI_1	RGCY	3 cut(s)	93, 197, 232
DpnI	GATC	2 cut(s)	114, 139
DpnII	GATC	2 cut(s)	112, 137
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	5 cut(s)	68, 86, 119, 127, 155
FaiI	YATR	7 cut(s)	66, 84, 117, 125, 153, 210, 235
FatI	CATG	5 cut(s)	64, 82, 115, 123, 151
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	105, 108
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	105, 108
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	105, 108
GsaI	CCCAGC	1 cut(s)	223
Hin1II	CATG	5 cut(s)	68, 86, 119, 127, 155
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
Hsp92II	CATG	5 cut(s)	68, 86, 119, 127, 155
Kzo9I	GATC	2 cut(s)	112, 137
LpnPI	CCDG	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	203
MalI	GATC	2 cut(s)	114, 139
MboI	GATC	2 cut(s)	112, 137
MboII	GAAGA	3 cut(s)	16, 68, 176
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	4 cut(s)	29, 32, 59, 136
MspA1I	CMGCKG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	112, 137
NlaIII	CATG	5 cut(s)	68, 86, 119, 127, 155
NspI	RCATGY	1 cut(s)	68
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	106, 109
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	2 cut(s)	112, 137
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	22
SetI	ASST	3 cut(s)	132, 199, 204
SfcI	CTRYAG	2 cut(s)	108, 173
SinI	GGWCC	1 cut(s)	127
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	88
TauI	GCSGC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	17, 177
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.