Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

29044099 .. 29045114

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAAATAAACTTGGGGAAATTGGCGTTTGACCTCGATTTTCATCCATTGCAGCAATTAGTGACTACAGGTCTCATCGATGGCCACCTTTATTCATCTGGTGGTTCACTACCTGAAAGGGTGTTGGAAGTTCATGCACATAACGAATCTTGCAGAGCTGCTCGGTTCGTCAACGGTGGCAGTGCCATTTTGACGGGGTCTCTAGACCACACAATTCTTGCAACGGATGTGGAAACTGGTTCTGCTATCGCTTGTCTTGAAAATGCTCATGACGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGGTCTGGAATACCAGACAACGATCTTGCTGCAATTCCTTTAATGCTCATCAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAACTCCTGGGAACTAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

152

Amino Acids

16.31

Weight (kDa)

5.15

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 148	9.2e-36	WDR55
WD40_Prp19	PF24814	13 - 145	4e-09	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	18 - 148	8.3e-13	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	18 - 148	7.1e-09	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	42 - 140	1.9e-07	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	43 - 143	7.5e-07	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	44 - 146	3.6e-12	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AciI	CCGC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	158, 425
AluI	AGCT	2 cut(s)	158, 425
Alw26I	GTCTC	2 cut(s)	77, 204
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	52, 158, 372
AspS9I	GGNCC	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	64, 145, 359
BccI	CCATC	2 cut(s)	74, 323
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	77, 204
BfaI	CTAG	3 cut(s)	203, 450, 457
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	53, 159, 373
BlsI	GCNGC	3 cut(s)	54, 160, 374
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	453
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	265, 314
BpmI	CTGGAG	1 cut(s)	342
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	77, 204
BsaJI	CCNNGG	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	2 cut(s)	47, 312
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	43, 232
BseJI	GATNNNNATC	1 cut(s)	42
BseMI	GCAATG	2 cut(s)	47, 312
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	64, 145, 359
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	77, 204
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	2 cut(s)	77, 204
Bsp143I	GATC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	77, 204
BsrDI	GCAATG	2 cut(s)	47, 312
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	43, 232
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	2 cut(s)	77, 204
BstMBI	GATC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	64, 145, 359
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	43, 232
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	453
ClaI	ATCGAT	1 cut(s)	78
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	3 cut(s)	134, 269, 433
CviJI	RGCY	4 cut(s)	84, 158, 336, 425
CviKI_1	RGCY	4 cut(s)	84, 158, 336, 425
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
DriI	GACNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	77, 204
Eco47I	GGWCC	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	137, 272, 436
FaiI	YATR	6 cut(s)	135, 141, 270, 293, 413, 434
FatI	CATG	3 cut(s)	133, 268, 432
Fnu4HI	GCNGC	3 cut(s)	53, 159, 373
FokI	GGATG	2 cut(s)	30, 239
Fsp4HI	GCNGC	3 cut(s)	53, 159, 373
FspBI	CTAG	3 cut(s)	203, 450, 457
GluI	GCNGC	3 cut(s)	53, 159, 373
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	137, 272, 436
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	146, 428
Hpy166II	GTNNAC	2 cut(s)	107, 172
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	6 cut(s)	203, 257, 269, 321, 349, 395
Hpy8I	GTNNAC	2 cut(s)	107, 172
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	52, 137, 153, 221, 278, 375
Hsp92II	CATG	3 cut(s)	137, 272, 436
Kzo9I	GATC	1 cut(s)	365
Lsp1109I	GCAGC	3 cut(s)	64, 145, 359
LweI	GCATC	2 cut(s)	265, 314
MaeI	CTAG	3 cut(s)	203, 450, 457
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	4 cut(s)	20, 56, 213, 376
MluNI	TGGCCA	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	44, 326, 328
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	342, 384
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	137, 272, 436
NmuCI	GTSAC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	146, 428
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	54, 160, 374
PpuMI	RGGWCCY	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	453
PspPPI	RGGWCCY	1 cut(s)	453
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	342, 384
SatI	GCNGC	3 cut(s)	53, 159, 373
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	8 cut(s)	36, 73, 90, 115, 160, 348, 427, 455
SfaNI	GCATC	2 cut(s)	265, 314
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	20, 56, 213, 376
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	3 cut(s)	203, 450, 457
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	36, 78
TasI	AATT	4 cut(s)	20, 56, 213, 376
TfiI	GAWTC	2 cut(s)	146, 428
Tru1I	TTAA	2 cut(s)	342, 384
Tru9I	TTAA	2 cut(s)	342, 384
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	52, 158, 372
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	32, 84, 122, 449
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	3 cut(s)	203, 450, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.