Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

26082461 .. 26086393

Gene Structure 3933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG262400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAAATAAACTTGGGGAAATTGGCGTTTGACCTCGACTTTCATCCATCGGAGCAATTAGTGACTACAGGTCTCATCGATGGCGACCTTCACTTGTACCGATATTCATCTGGTTCAGTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCCGAGCTGCTCGGTTCGTCAACGGTGGCACTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCGACGGATGTGGAAACTGGCTCCGCTATCGCTCGCCTTGAAAATGCTCATGAGGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGGTCTGGGATACCAGACAGCGATCTTGCTGCAATTCCTTTCAAGCTCATGAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAACTCTTGGGAACTAGTGGGGATGGAACTCTGTCTGTTTGCAATCTTCGAAGAAATAAGGTCCAAGATAAATCTGAGTTTTCTGAAGACGAGCTACTGTCTGTTGTTATCATGAAGAATGGTCAGAAAGTTATTTGCAGCTCACAAACTGGGAATATATTGTTGTATTCATGGGGTTGTTTCAAGGATTGCAGTGATCGTTTTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTGAAGCTTGATGAAGATAGACTTATCGCTGGATCTGAGACCGGACTTATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

245

Amino Acids

26.71

Weight (kDa)

4.82

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 245	5.1e-77	WDR55
Beta-prop_WDR3_1st	PF25173	12 - 127	5.2e-12	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	12 - 191	1e-16	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	12 - 199	1.1e-13	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	12 - 173	1.5e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	14 - 204	1.2e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 207	8.1e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	44 - 165	2.1e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	47 - 206	2.5e-18	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 210	4.8e-17	THOC3 beta-propeller domain
EIF3I	PF24805	87 - 170	5.2e-06	EIF3I
Beta-prop_WDR3_1st	PF25173	106 - 241	3.7e-12	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	106 - 214	6.8e-07	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	113 - 240	7.1e-07	Echinoderm microtubule-associated protein first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AciI	CCGC	2 cut(s)	252, 312
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	98, 120
AgsI	TTSAA	4 cut(s)	269, 395, 628, 685
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	458
AluBI	AGCT	6 cut(s)	167, 398, 434, 538, 585, 688
AluI	AGCT	6 cut(s)	167, 398, 434, 538, 585, 688
Alw26I	GTCTC	3 cut(s)	77, 213, 713
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	167, 381, 582
ApoI	RAATTY	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	154, 368, 594
BccI	CCATC	4 cut(s)	55, 74, 332, 461
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	77, 213, 713
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	3 cut(s)	168, 382, 583
BlsI	GCNGC	3 cut(s)	169, 383, 584
Bme18I	GGWCC	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	250
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	3 cut(s)	274, 323, 664
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	195, 351
Bpu14I	TTCGAA	1 cut(s)	493
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	3 cut(s)	77, 213, 713
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 398, 428
Bse1I	ACTGG	2 cut(s)	250, 598
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	78
BseGI	GGATG	4 cut(s)	43, 241, 289, 472
BseJI	GATNNNNATC	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	510, 708
BseNI	ACTGG	2 cut(s)	250, 598
BseXI	GCAGC	3 cut(s)	154, 368, 594
BshVI	ATCGAT	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	723
BsmAI	GTCTC	3 cut(s)	77, 213, 713
Bso31I	GGTCTC	3 cut(s)	77, 213, 713
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	374, 640, 652, 713
BspACI	CCGC	2 cut(s)	252, 312
BspCNI	CTCAG	2 cut(s)	511, 709
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	3 cut(s)	277, 400, 555
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	3 cut(s)	77, 213, 713
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	250, 598
BssMI	GATC	4 cut(s)	374, 640, 652, 713
Bst4CI	ACNGT	2 cut(s)	185, 543
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	519, 717
BstF5I	GGATG	4 cut(s)	43, 241, 289, 472
BstKTI	GATC	4 cut(s)	377, 643, 655, 716
BstMAI	GTCTC	3 cut(s)	77, 213, 713
BstMBI	GATC	4 cut(s)	374, 640, 652, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	154, 368, 594
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	355
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	43, 241, 289, 472
BtsI	GCAGTG	2 cut(s)	189, 643
BtsIMutI	CAGTG	2 cut(s)	189, 643
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	3 cut(s)	277, 400, 555
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	97, 119
CviAII	CATG	6 cut(s)	143, 278, 401, 442, 556, 615
CviJI	RGCY	8 cut(s)	167, 249, 345, 398, 434, 538, 585, 688
CviKI_1	RGCY	8 cut(s)	167, 249, 345, 398, 434, 538, 585, 688
CviQI	GTAC	2 cut(s)	97, 119
DdeI	CTNAG	2 cut(s)	519, 717
DpnI	GATC	4 cut(s)	376, 642, 654, 715
DpnII	GATC	4 cut(s)	374, 640, 652, 713
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 213, 713
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	549
FaeI	CATG	6 cut(s)	146, 281, 404, 445, 559, 618
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FatI	CATG	6 cut(s)	142, 277, 400, 441, 555, 614
Fnu4HI	GCNGC	3 cut(s)	168, 382, 583
FokI	GGATG	4 cut(s)	30, 248, 296, 479
Fsp4HI	GCNGC	3 cut(s)	168, 382, 583
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	168, 382, 583
GsuI	CTGGAG	2 cut(s)	195, 351
HapII	CCGG	1 cut(s)	723
Hin1II	CATG	6 cut(s)	146, 281, 404, 445, 559, 618
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	2 cut(s)	155, 437
HpaII	CCGG	1 cut(s)	723
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	52, 418, 520, 529, 570, 718
Hpy188III	TCNNGA	5 cut(s)	212, 278, 330, 401, 556
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	185, 543
HpyCH4V	TGCA	6 cut(s)	146, 287, 384, 486, 582, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	2 cut(s)	519, 717
Hsp92II	CATG	6 cut(s)	146, 281, 404, 445, 559, 618
Kzo9I	GATC	4 cut(s)	374, 640, 652, 713
LmnI	GCTCC	2 cut(s)	52, 254
Lsp1109I	GCAGC	3 cut(s)	154, 368, 594
LweI	GCATC	3 cut(s)	274, 323, 664
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	4 cut(s)	376, 642, 654, 715
MboI	GATC	4 cut(s)	374, 640, 652, 713
MboII	GAAGA	5 cut(s)	482, 507, 542, 571, 707
MflI	RGATCY	1 cut(s)	713
MluCI	AATT	5 cut(s)	20, 56, 222, 385, 664
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	5 cut(s)	44, 274, 335, 337, 397
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	4 cut(s)	374, 640, 652, 713
NlaIII	CATG	6 cut(s)	146, 281, 404, 445, 559, 618
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	3 cut(s)	277, 400, 555
PfeI	GAWTC	2 cut(s)	155, 437
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	169, 383, 584
PsiI	TTATAA	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	98, 120
RsaNI	GTAC	2 cut(s)	97, 119
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	168, 382, 583
Sau3AI	GATC	4 cut(s)	374, 640, 652, 713
Sau96I	GGNCC	1 cut(s)	505
SfaNI	GCATC	3 cut(s)	274, 323, 664
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	5 cut(s)	20, 56, 222, 385, 664
SsiI	CCGC	2 cut(s)	252, 312
SspMI	CTAG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	185, 543
TaqI	TCGA	3 cut(s)	36, 78, 493
TasI	AATT	5 cut(s)	20, 56, 222, 385, 664
TfiI	GAWTC	2 cut(s)	155, 437
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	196, 643
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	167, 381, 582
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	7 cut(s)	32, 96, 131, 458, 572, 603, 708
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	196, 643
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.