Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Forward (+)

10851218 .. 10855863

Gene Structure 4646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGATAAATTTGGGGCAATTGGCGTTTGACATTGATTTTCATCCATCACAGCAGTTGGTGACTACAGGTCTTATCAACGGAGAACTTCATTTGTACCGATACACATCTGATTCCATACCTGAAAGGGTGTTGCAAGTTCAAGCACACAGTGAATCTTGCAGAGCTGCTCGGTTCATCAACAATGGCCATGCCATTTTGACGGGGTCTCCCGACTGCTCAATTCTTGCAACCGATGTGGAAACTGGTGCTGCTGTTGCTCGCCTCGAAGATGCTCATGGGTGTGCAGTCAATAAGCTTATCAACTTGACGGAGTCTACGGTTGCCTCTGGAGATGACGAAGGCTGTATTAAGGTGTGGGATACCAGACAACAATCTTGCTGCAATTCTTTCAAAGTTCATGAAGAGTACATTTCTGATATGACTTTTGCAGCTGATTCCATGAAACTCCTGGGAACTAGTGGAGATGGGACTCTTTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAATCTGAATTTTCAGAAGAGGAGCTACTGTCTGTGGTTATCATGAAGAATGGTCGGAAAGTTGTTTGCAGCTCACACATTGGGAATCTATTATTGTATTCATGGGGGTGTTTCAATGATTGCAGTGATCGGTTTGTTGATCTCTCTCCCAATTCTGTTGATGTTTTGCTGAAGCTTGATGAAGATAGGTTGATCACTGGATCTGAGACTGGACTTATCAGCCTAGTAGGCATATTACCCAACAGAGTCATCCAACCAATTGCGGAGCACTCAGAATATCCTGTTGAGGGTCTTGCCTTTTCCCATGATAAAAAGTTTCTGGGCAGTATAGCACATGATCAGATGTTGAAGCTATGGGATATGGATGACTTATTGCAAGGTTCTACAAAGACTTTAAAGCATCAAGCAGCTGTGGAAGACAGTGATAGTGATGAGATGGATATGGATAATAATCCTCCGAAGTCAAAGAAAGGGACAAAGAGGAAAAATGCAAGCAAAGATCACGTTTCGAGCAGTTCAAACAATTTTTTTGCTGATTTACAGATGGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

356

Amino Acids

39.0

Weight (kDa)

4.92

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	1 cut(s)	776
AclWI	GGATC	1 cut(s)	721
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	10, 521
AcuI	CTGAAG	1 cut(s)	704
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	98, 410
AfiI	CCNNNNNNNGG	1 cut(s)	800
AgsI	TTSAA	5 cut(s)	143, 394, 628, 862, 1032
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	9 cut(s)	167, 298, 434, 512, 538, 585, 688, 865, 923
AluI	AGCT	9 cut(s)	167, 298, 434, 512, 538, 585, 688, 865, 923
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	2 cut(s)	213, 713
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	167, 251, 381, 431, 582, 920
ApoI	RAATTY	2 cut(s)	10, 521
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	6 cut(s)	154, 238, 368, 443, 594, 932
BccI	CCATC	5 cut(s)	55, 461, 943, 1051, 1055
BciT130I	CCWGG	1 cut(s)	452
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	2 cut(s)	705, 850
BcoDI	GTCTC	2 cut(s)	213, 713
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	2 cut(s)	459, 737
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	6 cut(s)	168, 252, 382, 432, 583, 921
BlsI	GCNGC	6 cut(s)	169, 253, 383, 433, 584, 922
Bme1390I	CCNGG	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	262, 922
BpiI	GAAGAC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	493
BsaBI	GATNNNNATC	3 cut(s)	42, 106, 963
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	451
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse1I	ACTGG	3 cut(s)	250, 715, 727
Bse8I	GATNNNNATC	3 cut(s)	42, 106, 963
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	4 cut(s)	43, 762, 883, 1066
BseJI	GATNNNNATC	3 cut(s)	42, 106, 963
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	708, 798
BseNI	ACTGG	3 cut(s)	250, 715, 727
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	6 cut(s)	154, 238, 368, 443, 594, 932
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	783
BslFI	GGGAC	2 cut(s)	484, 1000
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	2 cut(s)	213, 713
BsmFI	GGGAC	2 cut(s)	484, 1000
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
BspACI	CCGC	1 cut(s)	776
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	709, 797
BspHI	TCATGA	2 cut(s)	400, 555
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	250, 715, 727
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	4 cut(s)	152, 322, 543, 935
Bst6I	CTCTTC	2 cut(s)	399, 525
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	262, 510, 1006
BstDEI	CTNAG	2 cut(s)	717, 784
BstF5I	GGATG	4 cut(s)	43, 762, 883, 1066
BstKTI	GATC	6 cut(s)	643, 655, 708, 716, 853, 1015
BstMAI	GTCTC	2 cut(s)	213, 713
BstMBI	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 741
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	154, 238, 368, 443, 594, 932
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	43, 762, 883, 1066
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	4 cut(s)	157, 643, 708, 940
Cac8I	GCNNGC	3 cut(s)	262, 510, 1006
CciI	TCATGA	2 cut(s)	400, 555
Csp6I	GTAC	2 cut(s)	97, 409
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	8 cut(s)	191, 278, 401, 442, 556, 615, 818, 848
CviQI	GTAC	2 cut(s)	97, 409
DdeI	CTNAG	2 cut(s)	717, 784
DpnI	GATC	6 cut(s)	642, 654, 707, 715, 852, 1014
DpnII	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
DraI	TTTAAA	1 cut(s)	909
DraIII	CACNNNGTG	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	399, 525
Eam1105I	GACNNNNNGTC	1 cut(s)	69
EarI	CTCTTC	2 cut(s)	399, 525
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	8 cut(s)	194, 281, 404, 445, 559, 618, 821, 851
FaqI	GGGAC	2 cut(s)	484, 1000
FatI	CATG	8 cut(s)	190, 277, 400, 441, 555, 614, 817, 847
FbaI	TGATCA	2 cut(s)	705, 850
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	6 cut(s)	168, 252, 382, 432, 583, 921
FokI	GGATG	3 cut(s)	30, 749, 890
Fsp4HI	GCNGC	6 cut(s)	168, 252, 382, 432, 583, 921
FspBI	CTAG	2 cut(s)	459, 737
GluI	GCNGC	6 cut(s)	168, 252, 382, 432, 583, 921
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	8 cut(s)	194, 281, 404, 445, 559, 618, 821, 851
HindIII	AAGCTT	2 cut(s)	296, 686
HinfI	GANTC	7 cut(s)	113, 155, 314, 437, 472, 598, 759
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	9 cut(s)	112, 418, 520, 529, 570, 718, 787, 855, 972
Hpy188III	TCNNGA	4 cut(s)	212, 330, 401, 556
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	152, 322, 543, 935
HpyCH4IV	ACGT	1 cut(s)	1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 741
HpyF3I	CTNAG	2 cut(s)	717, 784
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	8 cut(s)	194, 281, 404, 445, 559, 618, 821, 851
Ksp22I	TGATCA	2 cut(s)	705, 850
Kzo9I	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
LmnI	GCTCC	2 cut(s)	535, 778
Lsp1109I	GCAGC	6 cut(s)	154, 238, 368, 443, 594, 932
LweI	GCATC	2 cut(s)	262, 922
MaeI	CTAG	2 cut(s)	459, 737
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	6 cut(s)	642, 654, 707, 715, 852, 1014
MboI	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
MboII	GAAGA	8 cut(s)	281, 416, 482, 507, 542, 571, 707, 941
MfeI	CAATTG	2 cut(s)	20, 771
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	783
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	8 cut(s)	10, 20, 222, 385, 521, 664, 771, 1036
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	323, 466, 768
MmeI	TCCRAC	2 cut(s)	548, 790
MnlI	CCTC	6 cut(s)	275, 337, 526, 793, 978, 987
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	351, 908
MslI	CAYNNNNRTG	2 cut(s)	282, 619
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	434, 923
MspR9I	CCNGG	1 cut(s)	452
MunI	CAATTG	2 cut(s)	20, 771
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	257, 741
NdeII	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
NlaIII	CATG	8 cut(s)	194, 281, 404, 445, 559, 618, 821, 851
NmuCI	GTSAC	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	2 cut(s)	400, 555
PfeI	GAWTC	4 cut(s)	113, 155, 437, 598
PflFI	GACNNNGTC	2 cut(s)	205, 313
PkrI	GCNGC	6 cut(s)	169, 253, 383, 433, 584, 922
PleI	GAGTC	3 cut(s)	322, 466, 767
PpsI	GAGTC	3 cut(s)	322, 466, 767
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	713
PsyI	GACNNNGTC	2 cut(s)	205, 313
PvuII	CAGCTG	2 cut(s)	434, 923
RsaI	GTAC	2 cut(s)	98, 410
RsaNI	GTAC	2 cut(s)	97, 409
RseI	CAYNNNNRTG	2 cut(s)	282, 619
SaqAI	TTAA	2 cut(s)	351, 908
SatI	GCNGC	6 cut(s)	168, 252, 382, 432, 583, 921
Sau3AI	GATC	6 cut(s)	640, 652, 705, 713, 850, 1012
SchI	GAGTC	3 cut(s)	323, 466, 768
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	2 cut(s)	262, 922
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	493
SmiMI	CAYNNNNRTG	2 cut(s)	282, 619
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	8 cut(s)	10, 20, 222, 385, 521, 664, 771, 1036
SsiI	CCGC	1 cut(s)	776
SspMI	CTAG	2 cut(s)	459, 737
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	152, 322, 543, 935
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	3 cut(s)	267, 493, 1022
TasI	AATT	8 cut(s)	10, 20, 222, 385, 521, 664, 771, 1036
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	4 cut(s)	113, 155, 437, 598
Tru1I	TTAA	2 cut(s)	351, 908
Tru9I	TTAA	2 cut(s)	351, 908
TscAI	CASTG	4 cut(s)	157, 643, 715, 940
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	6 cut(s)	167, 251, 381, 431, 582, 920
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	9 cut(s)	32, 80, 166, 389, 417, 458, 572, 603, 708
TspGWI	ACGGA	2 cut(s)	96, 326
TspRI	CASTG	4 cut(s)	157, 643, 715, 940
Tth111I	GACNNNGTC	2 cut(s)	205, 313
XapI	RAATTY	2 cut(s)	10, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	2 cut(s)	459, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.