Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

5423298 .. 5425093

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTTTTGCGGCTGATTCCATGAAACTCCTAGGAACTAGTGGAGACGGGACTCTTTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAATCTGAATTTTCAGAAGAGGAGCTACTGTCTGTGGTTATCATGAAGAATGGTCGGAAAGTGGTGTGCAGCTCACACATTGGGAATCTGTTATTGTACTCATGGGGATCTTTCAAGGATTGCAGCGATCGATTTGTTGATCTCTCTCCGAATTCTGTTGATGTTTTGTTGAAGCTTGATGAAGATAGGTTGATCACTGGATCTGAAACTGGACTTATCAGCCTCGTAGGTATATTACCCAACAGAGTCATCCAACCTATTGCAGAGCACTCAGAATACCCGGTTGAGGGTCTCGCTTTTTCCCACGATAAAAAGTTTCTGGGCAGCATAGCACATGATCAGATGTTGAAGCTGTGGGATATGGATGAGTTATTGCAAGGTTCGACGAAGCCTTCAAAGCCTCAAGCAGCTGTGGAGGACAGCGATAGTGATGATATGGATATGGATATTAATCCTCCGAAGTCGAACAAAGGGACAAAAAGGAAAAATGCAAGCAAAGATCGTGTTTCGGGAAGTTCAAACGATTTTTTTGCTGATTTACAGATGGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

216

Amino Acids

23.63

Weight (kDa)

4.94

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	208, 301
AcsI	RAATTY	2 cut(s)	101, 244
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	379, 380
AgsI	TTSAA	5 cut(s)	208, 265, 442, 489, 612
AhlI	ACTAGT	1 cut(s)	38
AluBI	AGCT	6 cut(s)	92, 118, 165, 268, 445, 503
AluI	AGCT	6 cut(s)	92, 118, 165, 268, 445, 503
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	39, 389
AlwI	GGATC	2 cut(s)	208, 301
ApeKI	GCWGC	4 cut(s)	162, 216, 417, 500
ApoI	RAATTY	2 cut(s)	101, 244
AseI	ATTAAT	1 cut(s)	543
AspA2I	CCTAGG	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	374
AsuII	TTCGAA	1 cut(s)	73
AvrII	CCTAGG	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	174, 228, 429, 512
BccI	CCATC	1 cut(s)	631
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BclI	TGATCA	2 cut(s)	285, 430
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	39, 389
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	2 cut(s)	32, 39
BisI	GCNGC	5 cut(s)	12, 163, 217, 418, 501
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	5 cut(s)	13, 164, 218, 419, 502
Bme1390I	CCNGG	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 380
Bse1I	ACTGG	2 cut(s)	295, 307
Bse8I	GATNNNNATC	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	342, 463
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	2 cut(s)	379, 380
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	295, 307
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	174, 228, 429, 512
BsgI	GTGCAG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	2 cut(s)	64, 580
BslI	CCNNNNNNNGG	2 cut(s)	379, 380
BsmAI	GTCTC	2 cut(s)	39, 389
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	64, 580
Bso31I	GGTCTC	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	377
BspDI	ATCGAT	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	135
BspPI	GGATC	2 cut(s)	208, 301
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	295, 307
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	90, 586
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	342, 463
BstKTI	GATC	7 cut(s)	203, 223, 235, 288, 296, 433, 595
BstMAI	GTCTC	2 cut(s)	39, 389
BstMBI	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	174, 228, 429, 512
BstX2I	RGATCY	2 cut(s)	200, 293
BstYI	RGATCY	2 cut(s)	200, 293
Bsu15I	ATCGAT	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	342, 463
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	90, 586
CciI	TCATGA	1 cut(s)	135
ClaI	ATCGAT	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	22, 136, 195, 428
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	7 cut(s)	202, 222, 234, 287, 295, 432, 594
DpnII	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	25, 139, 198, 431
FaiI	YATR	9 cut(s)	23, 137, 196, 326, 422, 429, 455, 530, 536
FaqI	GGGAC	2 cut(s)	64, 580
FatI	CATG	4 cut(s)	21, 135, 194, 427
FbaI	TGATCA	2 cut(s)	285, 430
Fnu4HI	GCNGC	5 cut(s)	12, 163, 217, 418, 501
FokI	GGATG	2 cut(s)	329, 470
Fsp4HI	GCNGC	5 cut(s)	12, 163, 217, 418, 501
FspBI	CTAG	2 cut(s)	32, 39
GluI	GCNGC	5 cut(s)	12, 163, 217, 418, 501
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	4 cut(s)	25, 139, 198, 431
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	4 cut(s)	17, 52, 178, 339
HpaII	CCGG	1 cut(s)	374
Hpy188I	TCNGA	8 cut(s)	100, 109, 150, 243, 298, 367, 435, 552
Hpy188III	TCNNGA	2 cut(s)	136, 603
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	7 cut(s)	66, 88, 162, 216, 356, 469, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	1 cut(s)	364
Hsp92II	CATG	4 cut(s)	25, 139, 198, 431
Ksp22I	TGATCA	2 cut(s)	285, 430
Kzo9I	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	276, 288, 387, 398
Lsp1109I	GCAGC	4 cut(s)	174, 228, 429, 512
MaeI	CTAG	2 cut(s)	32, 39
MalI	GATC	7 cut(s)	202, 222, 234, 287, 295, 432, 594
MboI	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
MboII	GAAGA	5 cut(s)	62, 87, 122, 151, 287
MflI	RGATCY	2 cut(s)	200, 293
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	101, 244
MlyI	GAGTC	2 cut(s)	46, 348
MmeI	TCCRAC	2 cut(s)	128, 370
MnlI	CCTC	7 cut(s)	106, 326, 373, 502, 504, 558, 634
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
NlaIII	CATG	4 cut(s)	25, 139, 198, 431
NspV	TTCGAA	1 cut(s)	73
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	17, 178
PkrI	GCNGC	5 cut(s)	13, 164, 218, 419, 502
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	2 cut(s)	46, 347
PpsI	GAGTC	2 cut(s)	46, 347
PshBI	ATTAAT	1 cut(s)	543
PsuI	RGATCY	2 cut(s)	200, 293
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	5 cut(s)	12, 163, 217, 418, 501
Sau3AI	GATC	7 cut(s)	200, 220, 232, 285, 293, 430, 592
SchI	GAGTC	2 cut(s)	46, 348
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	2 cut(s)	101, 244
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	32, 39
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	73, 223, 476, 557
TasI	AATT	2 cut(s)	101, 244
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	17, 178
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	4 cut(s)	162, 216, 417, 500
TspDTI	ATGAA	3 cut(s)	38, 152, 288
TspRI	CASTG	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	2 cut(s)	101, 244
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	2 cut(s)	32, 39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.