Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

41120730 .. 41122451

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATCTATGTCAAGCTATGATGATTGAGGAAGTGATTATTGAGAGTGATTGCTTAGTTGCTATTCAAGCTATAACATCAGAGGCGCCTGATATGTCTGTTTATAGTGCTATTATTGAGGATATCAAGGCTGGTACAAGAGGTTTTCGGACCATCTCTTTTGTTCATGCTTCTCGTTCTGCAAATTGTGTTGCTCGTAGGCTAGCTAGTCATGCCTTTGAAAATGAAGATGGGCTCTCCCTACAGGCCTACCGACACAAGTGTCTAACTGAGGAAATGGAAATAAACTTGGGGAAATTGGCGTTTGACCTCGATTTTCATCCATCGCAGCAATTAGTGACTACAGGTCTCACCGATGGCCACCTTCACTTGTATCGATATTCATCTGGTGGTTCACTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCAGAGCTGCTCTGTTCGTCAACGGTGGCAGTGCCATTTTGACGGGGTCTCTAGACCACACAATCTTGCAATATGTGGAAACTGGTTCTGCTATCGCTTGCCTTGAAAATGCTCATGACGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGCTCTGGGATACCAGACAACGATCTTGCTGCAATTCCTTTAATGCTCATCAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAAGTCCTGGGAACTAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

247

Amino Acids

26.94

Weight (kDa)

5.09

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 72	2.5e-09	Reverse transcriptase-like
Beta-prop_EML	PF23409	75 - 229	1.4e-06	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	94 - 240	1.8e-36	WDR55
WD40_CDC20-Fz	PF24807	102 - 243	9.6e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	104 - 241	3e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	105 - 241	6.8e-12	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	106 - 238	4.7e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	112 - 240	5.6e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	136 - 236	8.5e-06	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AasI	GACNNNNNNGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	68, 221, 545
AhdI	GACNNNNNGTC	1 cut(s)	345
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	6 cut(s)	17, 71, 206, 446, 631, 710
AluI	AGCT	6 cut(s)	17, 71, 206, 446, 631, 710
Alw26I	GTCTC	2 cut(s)	353, 492
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	246, 358
ApeKI	GCWGC	3 cut(s)	328, 446, 657
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	150, 738
AsuHPI	GGTGA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	150, 738
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	340, 433, 644
BccI	CCATC	5 cut(s)	161, 224, 331, 350, 608
BcgI	CGANNNNNNTGC	2 cut(s)	639, 673
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	353, 492
BfaI	CTAG	5 cut(s)	203, 207, 491, 735, 742
BfmI	CTRYAG	2 cut(s)	242, 342
BfoI	RGCGCY	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	3 cut(s)	329, 447, 658
BlsI	GCNGC	3 cut(s)	330, 448, 659
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	2 cut(s)	150, 738
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	150, 738
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	550, 599
BmtI	GCTAGC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	627
Bsa29I	ATCGAT	1 cut(s)	376
BsaBI	GATNNNNATC	2 cut(s)	318, 382
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	2 cut(s)	353, 492
BsaJI	CCNNGG	1 cut(s)	727
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	2 cut(s)	318, 382
BseBI	CCWGG	1 cut(s)	728
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	2 cut(s)	318, 382
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	526
BseXI	GCAGC	3 cut(s)	340, 433, 644
BshFI	GGCC	2 cut(s)	248, 360
BshNI	GGYRCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	353, 492
BsnI	GGCC	2 cut(s)	248, 360
Bso31I	GGTCTC	2 cut(s)	353, 492
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	4, 650
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	248, 360
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	85
BspTNI	GGTCTC	2 cut(s)	353, 492
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	2 cut(s)	4, 650
BssNI	GRCGYC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	204, 538
BstDEI	CTNAG	2 cut(s)	55, 270
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	7, 653
BstMAI	GTCTC	2 cut(s)	353, 492
BstMBI	GATC	2 cut(s)	4, 650
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 212, 438
BstNI	CCWGG	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	2 cut(s)	242, 342
BstV1I	GCAGC	3 cut(s)	340, 433, 644
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	248, 360
BsuTUI	ATCGAT	1 cut(s)	376
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	204, 538
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	150, 738
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	5 cut(s)	167, 212, 422, 554, 718
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	55, 270
DinI	GGCGCC	1 cut(s)	87
DpnI	GATC	2 cut(s)	6, 652
DpnII	GATC	2 cut(s)	4, 650
DrdI	GACNNNNNNGTC	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	358
Eam1105I	GACNNNNNGTC	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	2 cut(s)	353, 492
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	150, 738
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	726
EcoRV	GATATC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
FaeI	CATG	5 cut(s)	170, 215, 425, 557, 721
FatI	CATG	5 cut(s)	166, 211, 421, 553, 717
Fnu4HI	GCNGC	3 cut(s)	329, 447, 658
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	329, 447, 658
FspBI	CTAG	5 cut(s)	203, 207, 491, 735, 742
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	3 cut(s)	329, 447, 658
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	248, 360
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	170, 215, 425, 557, 721
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	434, 713
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	395, 460
Hpy188I	TCNGA	3 cut(s)	82, 150, 694
Hpy188III	TCNNGA	4 cut(s)	491, 554, 606, 680
Hpy8I	GTNNAC	2 cut(s)	395, 460
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	6 cut(s)	182, 425, 441, 508, 563, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 212, 438
HpyF3I	CTNAG	2 cut(s)	55, 270
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	5 cut(s)	170, 215, 425, 557, 721
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	4, 650
Lsp1109I	GCAGC	3 cut(s)	340, 433, 644
LweI	GCATC	2 cut(s)	550, 599
MaeI	CTAG	5 cut(s)	203, 207, 491, 735, 742
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	6, 652
MboI	GATC	2 cut(s)	4, 650
MboII	GAAGA	1 cut(s)	239
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	4 cut(s)	184, 296, 332, 661
MluNI	TGGCCA	1 cut(s)	360
Mly113I	GGCGCC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	8 cut(s)	22, 76, 112, 134, 265, 320, 611, 613
Mox20I	TGGCCA	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	627, 669
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	728
MvaI	CCWGG	1 cut(s)	728
MwoI	GCNNNNNNNGC	3 cut(s)	68, 212, 438
NarI	GGCGCC	1 cut(s)	86
NdeII	GATC	2 cut(s)	4, 650
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	5 cut(s)	170, 215, 425, 557, 721
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	337
PagI	TCATGA	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	434, 713
PflFI	GACNNNGTC	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	330, 448, 659
PluTI	GGCGCC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	738
PsiI	TTATAA	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	150, 738
PspPPI	RGGWCCY	1 cut(s)	738
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	627, 669
SatI	GCNGC	3 cut(s)	329, 447, 658
Sau3AI	GATC	2 cut(s)	4, 650
Sau96I	GGNCC	2 cut(s)	150, 738
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	550, 599
SfcI	CTRYAG	2 cut(s)	242, 342
SfoI	GGCGCC	1 cut(s)	87
SinI	GGWCC	2 cut(s)	150, 738
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	184, 296, 332, 661
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	588
SspDI	GGCGCC	1 cut(s)	85
SspMI	CTAG	5 cut(s)	203, 207, 491, 735, 742
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	726
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	2 cut(s)	312, 376
TasI	AATT	4 cut(s)	184, 296, 332, 661
TfiI	GAWTC	2 cut(s)	434, 713
Tru1I	TTAA	2 cut(s)	627, 669
Tru9I	TTAA	2 cut(s)	627, 669
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	328, 446, 657
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	6 cut(s)	155, 240, 308, 372, 410, 734
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	484
VpaK11BI	GGWCC	2 cut(s)	150, 738
XbaI	TCTAGA	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	724
XspI	CTAG	5 cut(s)	203, 207, 491, 735, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.