Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

25739125 .. 25740271

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTGGAAACTGGTTCTGCTATCGATCGTCTTGGAAATGCTCAGGAGGATTAAGGTTATAAACTTGACCGCATCTACCATTGCCTTTGGAGATGATGAAGGTTGTATTAAGATCTGGGATACCAGACAACTATGTTGCTGCAATTCCTTTAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

52

Amino Acids

5.95

Weight (kDa)

7.65

Isoelectric Point (pI)

15.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AciI	CCGC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmsI	GCATC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	27
BshVI	ATCGAT	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	24, 111
BspACI	CCGC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	54
BspDI	ATCGAT	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	24, 111
BstDEI	CTNAG	2 cut(s)	41, 156
BstKTI	GATC	2 cut(s)	27, 114
BstMBI	GATC	2 cut(s)	24, 111
BstMCI	CGRYCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	112
BsuTUI	ATCGAT	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	41, 156
DpnI	GATC	2 cut(s)	26, 113
DpnII	GATC	2 cut(s)	24, 111
FaiI	YATR	2 cut(s)	59, 133
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	41, 156
Kzo9I	GATC	2 cut(s)	24, 111
LpnPI	CCDG	3 cut(s)	28, 100, 136
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	80
MalI	GATC	2 cut(s)	26, 113
MboI	GATC	2 cut(s)	24, 111
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	1 cut(s)	39
MseI	TTAA	3 cut(s)	51, 108, 150
NdeII	GATC	2 cut(s)	24, 111
PkrI	GCNGC	1 cut(s)	140
Ple19I	CGATCG	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	111
PvuI	CGATCG	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	51, 108, 150
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	24, 111
SetI	ASST	2 cut(s)	57, 103
SfaNI	GCATC	1 cut(s)	80
SgeI	CNNG	6 cut(s)	23, 43, 55, 76, 127, 135
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	69
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	51, 108, 150
Tru9I	TTAA	3 cut(s)	51, 108, 150
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.