Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Forward (+)

23469836 .. 23473898

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAATAAACTTGGGGAAGTTGGCGTTTGACCTCGACTTTCATCCATCGGAGCAATTAGTGACTACAGGTCTCATCGATGGCGACCTTCACTTGTACCGATATTCATCTGGTTCAGTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCAGAGCTGCTCGGTTCGTCAATGGTGGCAGTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCAACGGATGTGGAAACTGGTTCTGCTATCGCTCGCCTTGAAAATGCTCATGACGATGCAATCAATAGACTTGTAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGGTCTGGGATACCAGACAACGATCTTGCTGCAATTCCTTTAAAGCTCATGAGGACTACATCTCTGACATGACTTTTTCAGCTGATTCCATGAAACTCTTGGGAACTAGTGGGGATGGAACTCTGTCTGTTTGCAATCTTCGAAGAAATAAGGTCCAAGATAAATCTGAGTTTTCCGAAGACGAGCTACTGTCTGTTGTTATCATGAAGAATGGTCAGAAAGTTATTTGCAGCTCACAAACTGGGAATATATTGTTGTATTCATGGGGTTGTTTCAAGGATTGCAGTGATCGTTTTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTGAAGCTTGATGAAGATAGACTTATCGCTGGATCTGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAATCATCCAACCAATTGCAGAGCACTCAGAGTATCCGGTAGAGCGTCTTGCTTTTTCTCATGATAAAAAATTTCTGGGCAGTATAGCACATGATCAGATGTTGAAGCTGTGGGATATGGATGATATATTGCAAGGCTCTGGAAATACTTCAAGGACTCAAGCAACTGTGGTGGACAGTGATAGTGATGAGATGGATACAGATATTAATACTCCAAAGTCTAGAAAAGGCCGAAATGGTGTTAGCTCAATGGTTAGAGCACTCACTACTTATGTACGAAGTCATGGGTTTGAGTCACCATGGGGGCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

356

Amino Acids

39.01

Weight (kDa)

4.99

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 293	2.9e-95	WDR55
Beta-prop_WDR3_1st	PF25173	12 - 161	1.5e-18	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	12 - 190	3.7e-16	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	12 - 173	3.3e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	14 - 204	4.2e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 207	5e-11	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	28 - 168	2.6e-12	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	44 - 165	5.9e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	47 - 205	1.1e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 293	3.6e-24	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	106 - 200	1.2e-10	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	106 - 211	2.3e-06	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	113 - 240	8.2e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	133 - 294	7.2e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	166 - 294	2.9e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	2 cut(s)	664, 827
AfaI	GTAC	3 cut(s)	98, 120, 1032
AgsI	TTSAA	5 cut(s)	269, 628, 685, 862, 909
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	458
AluBI	AGCT	8 cut(s)	167, 398, 434, 538, 585, 688, 865, 1002
AluI	AGCT	8 cut(s)	167, 398, 434, 538, 585, 688, 865, 1002
Alw21I	GWGCWC	2 cut(s)	783, 1018
Alw26I	GTCTC	3 cut(s)	77, 213, 713
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	985
ApeKI	GCWGC	3 cut(s)	167, 381, 582
ApoI	RAATTY	2 cut(s)	664, 827
AseI	ATTAAT	1 cut(s)	963
Asp700I	GAANNNNTTC	1 cut(s)	904
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	1044
AsuII	TTCGAA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	783, 1018
BbvI	GCAGC	3 cut(s)	154, 368, 594
BccI	CCATC	5 cut(s)	55, 74, 332, 461, 943
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciVI	GTATCC	3 cut(s)	355, 801, 946
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	3 cut(s)	77, 213, 713
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	3 cut(s)	459, 737, 978
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	3 cut(s)	355, 801, 946
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	3 cut(s)	168, 382, 583
BlsI	GCNGC	3 cut(s)	169, 383, 584
Bme18I	GGWCC	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	505
BmrI	ACTGGG	1 cut(s)	603
BmsI	GCATC	3 cut(s)	274, 323, 664
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	195, 351
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	3 cut(s)	77, 213, 713
BsaJI	CCNNGG	1 cut(s)	1055
BsaWI	WCCGGW	2 cut(s)	722, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse1I	ACTGG	2 cut(s)	250, 598
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	1055
BseGI	GGATG	5 cut(s)	43, 241, 472, 762, 883
BseJI	GATNNNNATC	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	510, 708, 798
BseNI	ACTGG	2 cut(s)	250, 598
BseXI	GCAGC	3 cut(s)	154, 368, 594
BshFI	GGCC	1 cut(s)	987
BshVI	ATCGAT	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	783, 1018
BsiSI	CCGG	2 cut(s)	723, 794
BsmAI	GTCTC	3 cut(s)	77, 213, 713
BsnI	GGCC	1 cut(s)	987
Bso31I	GGTCTC	3 cut(s)	77, 213, 713
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	783, 1018
Bsp143I	GATC	5 cut(s)	374, 640, 652, 713, 850
Bsp19I	CCATGG	1 cut(s)	1055
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	3 cut(s)	511, 709, 797
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	4 cut(s)	277, 400, 555, 817
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	3 cut(s)	77, 213, 713
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	250, 598
BssECI	CCNNGG	1 cut(s)	1055
BssMI	GATC	5 cut(s)	374, 640, 652, 713, 850
BssT1I	CCWWGG	1 cut(s)	1055
Bst4CI	ACNGT	3 cut(s)	543, 925, 935
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	519, 717, 784
BstDSI	CCRYGG	1 cut(s)	1055
BstF5I	GGATG	5 cut(s)	43, 241, 472, 762, 883
BstKTI	GATC	5 cut(s)	377, 643, 655, 716, 853
BstMAI	GTCTC	3 cut(s)	77, 213, 713
BstMBI	GATC	5 cut(s)	374, 640, 652, 713, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 741
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	154, 368, 594
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	78
BsuI	GTATCC	3 cut(s)	355, 801, 946
BsuRI	GGCC	1 cut(s)	987
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	1055
BtsCI	GGATG	5 cut(s)	43, 241, 472, 762, 883
BtsI	GCAGTG	2 cut(s)	196, 643
BtsIMutI	CAGTG	3 cut(s)	196, 643, 940
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	4 cut(s)	277, 400, 555, 817
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	97, 119, 1031
CspCI	CAANNNNNGTGG	4 cut(s)	219, 254, 909, 944
CviQI	GTAC	3 cut(s)	97, 119, 1031
DdeI	CTNAG	3 cut(s)	519, 717, 784
DpnI	GATC	5 cut(s)	376, 642, 654, 715, 852
DpnII	GATC	5 cut(s)	374, 640, 652, 713, 850
DraI	TTTAAA	1 cut(s)	394
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	1055
Eco31I	GGTCTC	3 cut(s)	77, 213, 713
Eco47I	GGWCC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	1055
ErhI	CCWWGG	1 cut(s)	1055
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	3 cut(s)	168, 382, 583
FokI	GGATG	5 cut(s)	30, 248, 479, 749, 890
Fsp4HI	GCNGC	3 cut(s)	168, 382, 583
FspBI	CTAG	3 cut(s)	459, 737, 978
GluI	GCNGC	3 cut(s)	168, 382, 583
GsuI	CTGGAG	2 cut(s)	195, 351
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	2 cut(s)	723, 794
HgaI	GACGC	1 cut(s)	791
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	155, 437, 759, 913, 1049
HpaII	CCGG	2 cut(s)	723, 794
HphI	GGTGA	1 cut(s)	1044
Hpy166II	GTNNAC	2 cut(s)	304, 931
Hpy188I	TCNGA	8 cut(s)	52, 418, 520, 529, 570, 718, 787, 855
Hpy188III	TCNNGA	8 cut(s)	212, 278, 330, 401, 556, 818, 897, 978
Hpy8I	GTNNAC	2 cut(s)	304, 931
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	543, 925, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 741
HpyF3I	CTNAG	3 cut(s)	519, 717, 784
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	374, 640, 652, 713, 850
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	154, 368, 594
LweI	GCATC	3 cut(s)	274, 323, 664
MaeI	CTAG	3 cut(s)	459, 737, 978
MaeIII	GTNAC	2 cut(s)	61, 1050
MalI	GATC	5 cut(s)	376, 642, 654, 715, 852
MboI	GATC	5 cut(s)	374, 640, 652, 713, 850
MboII	GAAGA	5 cut(s)	482, 507, 542, 571, 707
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	2 cut(s)	783, 1018
MluCI	AATT	6 cut(s)	56, 222, 385, 664, 771, 827
MlyI	GAGTC	2 cut(s)	907, 1058
MmeI	TCCRAC	2 cut(s)	114, 790
MnlI	CCTC	4 cut(s)	44, 335, 337, 397
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	3 cut(s)	351, 393, 963
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	723, 794
MunI	CAATTG	1 cut(s)	771
MwoI	GCNNNNNNNGC	2 cut(s)	159, 741
NcoI	CCATGG	1 cut(s)	1055
NdeII	GATC	5 cut(s)	374, 640, 652, 713, 850
NmuCI	GTSAC	2 cut(s)	61, 1050
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	4 cut(s)	277, 400, 555, 817
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	3 cut(s)	155, 437, 759
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	169, 383, 584
PleI	GAGTC	2 cut(s)	907, 1057
PpsI	GAGTC	2 cut(s)	907, 1057
PshBI	ATTAAT	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	98, 120, 1032
RsaNI	GTAC	3 cut(s)	97, 119, 1031
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	3 cut(s)	351, 393, 963
SatI	GCNGC	3 cut(s)	168, 382, 583
Sau3AI	GATC	5 cut(s)	374, 640, 652, 713, 850
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	2 cut(s)	907, 1058
SduI	GDGCHC	2 cut(s)	783, 1018
SfaNI	GCATC	3 cut(s)	274, 323, 664
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	6 cut(s)	56, 222, 385, 664, 771, 827
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	3 cut(s)	459, 737, 978
StyI	CCWWGG	1 cut(s)	1055
TaaI	ACNGT	3 cut(s)	543, 925, 935
TaqI	TCGA	3 cut(s)	36, 78, 493
TasI	AATT	6 cut(s)	56, 222, 385, 664, 771, 827
TfiI	GAWTC	3 cut(s)	155, 437, 759
Tru1I	TTAA	3 cut(s)	351, 393, 963
Tru9I	TTAA	3 cut(s)	351, 393, 963
TscAI	CASTG	3 cut(s)	196, 643, 940
TseFI	GTSAC	2 cut(s)	61, 1050
TseI	GCWGC	3 cut(s)	167, 381, 582
Tsp45I	GTSAC	2 cut(s)	61, 1050
TspDTI	ATGAA	7 cut(s)	32, 96, 131, 458, 572, 603, 708
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	196, 643, 940
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	963
XapI	RAATTY	2 cut(s)	664, 827
XbaI	TCTAGA	1 cut(s)	977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	3 cut(s)	459, 737, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.