Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

34421033 .. 34424622

Gene Structure 3590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAAATAAACTTGGGGAAATTGGCGTTTGACCTCGATTTTCATCCATCGCAGCAATTAGTGACTACAGGTCTCACCGATGGCCACCTTCACTTGTATCGATATTCATCTGGTGGTTCACTACCTGAAAGGGTGTTGGAAGTTCATGCACATAGCGAATCTTGCAGAGCTGCTCTGTTCGTCAACGGTGGCAGTGCCATTTTGACAGGGTCTCTAGACCACACAATCTTGCAATATGTGGAAACTGGTTCTGCTATCGCTTGCCTTGAAAATGCTCATGACGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTCTGGAGATGATGGAGGCTGTATTAAGCTCTGGGATACCAGACAACGATCTTGCTGCAATTCCTTTAATGCTCATCAGGACTACATCTCCGATATGACTTTTTCAGCTGATTCCATGAAAGTCCTGGGAACTAGAAATAAGGTCCTAGATGAATCTGAGTTTTCAGAAGATGAGCTACTGTCTGTTGTTATCATGAAGAATGGTCAGAAAGTTATTTGCAGCTCTCAGACTGGGAATATATTGTTGTATTCATGGGGTTGTTTCAAGGATTGCAGTGATCGTTGTATTGATCTCTCTCCAATTTCTGTTGATGCTTTGTTTAAGCTTGATGAAGATAGACTTATTGCTGGATCTGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAGTCATCCAACCAATTGCAGAGCACTCAGAATATCCGGTAGAGCGTCTTGCTTTTTCTCATGATAAAAAGTTTCTGGGCAGCATAGCACATGATCAGATGTTAAAGCTCTGGGATATGGATGATATATTGCAAGGCTCTGGAAACACTTCAAGGACTCAAGCAACTGTGGGGGAGAATGATAGTGATGAGATGGATACAGATATTAATACTCCAAAGTCTAGAAAAGGAACAAAGAGAAAAAATGCAAGCAAAGATCATGTTATGGGTTCACACAACTTTTTTGCTGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

338

Amino Acids

37.12

Weight (kDa)

5.04

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 281	3.2e-74	WDR55
Beta-prop_EML	PF23409	10 - 155	3.8e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	12 - 150	4.7e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	12 - 149	1.3e-11	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	12 - 152	3.9e-07	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	14 - 148	7.9e-06	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	44 - 146	9.8e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	152 - 281	6.2e-06	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	166 - 281	4.7e-06	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	685
AcoI	YGGCCR	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	269, 592, 873
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	7 cut(s)	170, 355, 434, 502, 549, 652, 829
AluI	AGCT	7 cut(s)	170, 355, 434, 502, 549, 652, 829
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	3 cut(s)	77, 216, 677
AlwI	GGATC	1 cut(s)	685
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	52, 170, 381, 546, 801
AseI	ATTAAT	1 cut(s)	927
Asp700I	GAANNNNTTC	1 cut(s)	868
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	5 cut(s)	64, 157, 368, 558, 813
BccI	CCATC	4 cut(s)	55, 74, 332, 907
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	452
BciVI	GTATCC	2 cut(s)	355, 910
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	77, 216, 677
BfaI	CTAG	5 cut(s)	215, 459, 473, 701, 942
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	2 cut(s)	355, 910
BglI	GCCNNNNNGGC	1 cut(s)	705
BisI	GCNGC	5 cut(s)	53, 171, 382, 547, 802
BlsI	GCNGC	5 cut(s)	54, 172, 383, 548, 803
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	469
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	274, 323, 628
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	864
Bsa29I	ATCGAT	1 cut(s)	100
BsaBI	GATNNNNATC	2 cut(s)	42, 106
BsaI	GGTCTC	3 cut(s)	77, 216, 677
BsaJI	CCNNGG	1 cut(s)	451
BsaWI	WCCGGW	2 cut(s)	686, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bse1I	ACTGG	2 cut(s)	250, 562
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	42, 106
BseBI	CCWGG	1 cut(s)	452
BseCI	ATCGAT	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	3 cut(s)	43, 726, 847
BseJI	GATNNNNATC	2 cut(s)	42, 106
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	474, 566, 672, 762
BseNI	ACTGG	2 cut(s)	250, 562
BseXI	GCAGC	5 cut(s)	64, 157, 368, 558, 813
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	687, 758
BsmAI	GTCTC	3 cut(s)	77, 216, 677
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	3 cut(s)	77, 216, 677
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
BspACI	CCGC	1 cut(s)	312
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	4 cut(s)	475, 565, 673, 761
BspDI	ATCGAT	1 cut(s)	100
BspHI	TCATGA	3 cut(s)	277, 519, 781
BspPI	GGATC	1 cut(s)	685
BspTNI	GGTCTC	3 cut(s)	77, 216, 677
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	250, 562
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	3 cut(s)	188, 507, 889
BstC8I	GCNNGC	2 cut(s)	262, 970
BstDEI	CTNAG	4 cut(s)	483, 552, 681, 748
BstF5I	GGATG	3 cut(s)	43, 726, 847
BstKTI	GATC	6 cut(s)	377, 607, 619, 680, 817, 979
BstMAI	GTCTC	3 cut(s)	77, 216, 677
BstMBI	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 705
BstNI	CCWGG	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	450
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	64, 157, 368, 558, 813
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
Bsu15I	ATCGAT	1 cut(s)	100
BsuI	GTATCC	2 cut(s)	355, 910
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	43, 726, 847
BtsI	GCAGTG	2 cut(s)	199, 607
BtsIMutI	CAGTG	2 cut(s)	199, 607
Cac8I	GCNNGC	2 cut(s)	262, 970
CciI	TCATGA	3 cut(s)	277, 519, 781
Cfr13I	GGNCC	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	100
CseI	GACGC	1 cut(s)	755
CviAII	CATG	8 cut(s)	146, 278, 442, 520, 579, 782, 812, 980
DdeI	CTNAG	4 cut(s)	483, 552, 681, 748
DpnI	GATC	6 cut(s)	376, 606, 618, 679, 816, 978
DpnII	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
DriI	GACNNNNNGTC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	82
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 216, 677
Eco47I	GGWCC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	8 cut(s)	149, 281, 445, 523, 582, 785, 815, 983
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	8 cut(s)	145, 277, 441, 519, 578, 781, 811, 979
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	5 cut(s)	53, 171, 382, 547, 802
FokI	GGATG	3 cut(s)	30, 713, 854
Fsp4HI	GCNGC	5 cut(s)	53, 171, 382, 547, 802
FspBI	CTAG	5 cut(s)	215, 459, 473, 701, 942
GluI	GCNGC	5 cut(s)	53, 171, 382, 547, 802
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	687, 758
HgaI	GACGC	1 cut(s)	755
Hin1II	CATG	8 cut(s)	149, 281, 445, 523, 582, 785, 815, 983
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	5 cut(s)	158, 437, 479, 723, 877
HpaII	CCGG	2 cut(s)	687, 758
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	119, 184, 992
Hpy188I	TCNGA	8 cut(s)	418, 484, 493, 534, 555, 682, 751, 819
Hpy188III	TCNNGA	8 cut(s)	215, 278, 330, 404, 520, 782, 861, 942
Hpy8I	GTNNAC	3 cut(s)	119, 184, 992
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	188, 507, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 705
HpyF3I	CTNAG	4 cut(s)	483, 552, 681, 748
Hsp92II	CATG	8 cut(s)	149, 281, 445, 523, 582, 785, 815, 983
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
Lsp1109I	GCAGC	5 cut(s)	64, 157, 368, 558, 813
LweI	GCATC	3 cut(s)	274, 323, 628
MaeI	CTAG	5 cut(s)	215, 459, 473, 701, 942
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	6 cut(s)	376, 606, 618, 679, 816, 978
MboI	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
MboII	GAAGA	3 cut(s)	506, 535, 671
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	5 cut(s)	20, 56, 385, 627, 735
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	732, 871
MmeI	TCCRAC	2 cut(s)	117, 754
MnlI	CCTC	3 cut(s)	44, 335, 337
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	868
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	5 cut(s)	351, 393, 648, 824, 927
MslI	CAYNNNNRTG	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	687, 758
MspR9I	CCNGG	1 cut(s)	452
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	162, 705
NdeII	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
NlaIII	CATG	8 cut(s)	149, 281, 445, 523, 582, 785, 815, 983
NmuCI	GTSAC	1 cut(s)	61
PagI	TCATGA	3 cut(s)	277, 519, 781
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	3 cut(s)	158, 437, 479
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	54, 172, 383, 548, 803
PleI	GAGTC	2 cut(s)	731, 871
PpsI	GAGTC	2 cut(s)	731, 871
PpuMI	RGGWCCY	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	927
PsiI	TTATAA	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	5 cut(s)	351, 393, 648, 824, 927
SatI	GCNGC	5 cut(s)	53, 171, 382, 547, 802
Sau3AI	GATC	6 cut(s)	374, 604, 616, 677, 814, 976
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	2 cut(s)	732, 871
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	274, 323, 628
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	879
SmoI	CTYRAG	1 cut(s)	879
Sse9I	AATT	5 cut(s)	20, 56, 385, 627, 735
SsiI	CCGC	1 cut(s)	312
SspMI	CTAG	5 cut(s)	215, 459, 473, 701, 942
StyD4I	CCNGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	188, 507, 889
TaqI	TCGA	2 cut(s)	36, 100
TasI	AATT	5 cut(s)	20, 56, 385, 627, 735
TfiI	GAWTC	3 cut(s)	158, 437, 479
Tru1I	TTAA	5 cut(s)	351, 393, 648, 824, 927
Tru9I	TTAA	5 cut(s)	351, 393, 648, 824, 927
TscAI	CASTG	2 cut(s)	199, 607
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	5 cut(s)	52, 170, 381, 546, 801
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	8 cut(s)	32, 96, 134, 458, 492, 536, 567, 672
TspRI	CASTG	2 cut(s)	199, 607
Tth111I	GACNNNGTC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	927
XbaI	TCTAGA	2 cut(s)	214, 941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	5 cut(s)	215, 459, 473, 701, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.