Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

6735464 .. 6739440

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1063600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGATAAATTTGGGGCACTTGGCGTTTGACATTGATTTTCATCCATCGCAGCAGTTGGTCACTACTGGTCTTATCAATGGCGACCTTCACTTGTACCGATACACATCTGATTCCGTACCACAAAGGGTGTTGGAAGTTCATGCACACAGTGAATCTTGCAGAGCTGTTCGGTTCATCAACAATGGCCAAGCTATTTTGACGGGATCTCCCGACTGCTCAATTCTTGCTACGGATGTGGAAACTGGTGCTTCTATTGCTCGCCTGGACGAGGCTCACGGGTCTGCGGTCAATAAGCTTATCAATTTGACCGAGTCCACGGTGGCCTCTGGTGATGACGAAGGCTGTATTAAGGTGTGGGACACCAGGCAACAATCTTGCTGCAATACTTTTAAAGCTCATGAAGAGTACATTTCCGATATGACTTTTGCAGCTGATTCCATGAAACTCCTAGGAACTAGTGGAGATGGGACTCTTTCTGTTTGCAATCTTCGAAGAAATAAAGTTCAAGCTCAATCTGAATTTTCAGAAGAGGAGCTACTGTCCGTGGTTATCATGAAGAATGGTCGGAAAGTTGTTTGCAGCTCACATATTGGGAATCTATTATTGTATTCATGGGGCTGTTTCAAGGATTGCAGTGATCGATTTGTTGATCTCTCTCCGAATTCTGTGGATGTTTTGTTGAAGCTTGATGAAGATAGGTTGATCACTGGATCGGAAACTGGACTTATCAGCCTAGTAGGTATATTACCCAACAGAGTCATCCAACCTATTGCAGAACACTCAGACTATCCAGTTGAGGGTCTCGCTTTCTCCTATGATAAAAAGTTTCTGGGAAGTATAGCACATGATCAGATGTTGAAGGTGTGTCTATGGGATATGGATGAATTATTGCAAGGTTCTACAAATACATCAAGGCCTCAAGCAGCTGCAGAGGACAGCGATAGTGACGATATGGATATGGATATGAATCCTCCGAAGTCTAACAAAGGTACAAAGAAGAAAAATGCAAGCAAAGATCGTGTTTCGGGAAGTTCAAATGATTTTTTTGCTGATTTACAGATGGAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

358

Amino Acids

39.14

Weight (kDa)

4.78

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 296	5.1e-95	WDR55
WD40_Prp19	PF24814	11 - 183	2.9e-16	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	12 - 161	1e-19	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	14 - 203	1e-11	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	15 - 170	4.9e-08	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	21 - 207	2.7e-11	WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz	PF24807	27 - 169	1.3e-13	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	36 - 165	4.3e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	47 - 205	2.3e-18	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 298	1e-24	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	104 - 209	4.7e-07	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	105 - 240	1.7e-12	WDR3 first beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	214, 721
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	3 cut(s)	10, 521, 664
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	4 cut(s)	98, 120, 410, 994
AfiI	CCNNNNNNNGG	2 cut(s)	271, 800
AgsI	TTSAA	5 cut(s)	509, 628, 685, 862, 1038
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	264, 365
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	2 cut(s)	214, 721
AoxI	GGCC	3 cut(s)	187, 324, 917
ApeKI	GCWGC	6 cut(s)	52, 381, 431, 582, 926, 929
ApoI	RAATTY	3 cut(s)	10, 521, 664
AspA2I	CCTAGG	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	493
AvrII	CCTAGG	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	189
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbvI	GCAGC	6 cut(s)	64, 368, 443, 594, 916, 938
BccI	CCATC	3 cut(s)	55, 461, 1057
BciT130I	CCWGG	2 cut(s)	266, 367
BclI	TGATCA	2 cut(s)	705, 850
BcoDI	GTCTC	1 cut(s)	809
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	3 cut(s)	452, 459, 737
BfmI	CTRYAG	1 cut(s)	930
BisI	GCNGC	6 cut(s)	53, 382, 432, 583, 927, 930
BlnI	CCTAGG	1 cut(s)	451
BlsI	GCNGC	6 cut(s)	54, 383, 433, 584, 928, 931
Bme1390I	CCNGG	2 cut(s)	266, 367
BmrFI	CCNGG	2 cut(s)	266, 367
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	906
Bsa29I	ATCGAT	1 cut(s)	643
BsaBI	GATNNNNATC	3 cut(s)	42, 106, 969
BsaI	GGTCTC	1 cut(s)	809
BsaJI	CCNNGG	3 cut(s)	318, 451, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 527, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 800
Bse1I	ACTGG	5 cut(s)	73, 250, 715, 727, 794
Bse8I	GATNNNNATC	3 cut(s)	42, 106, 969
BseBI	CCWGG	2 cut(s)	266, 367
BseCI	ATCGAT	1 cut(s)	643
BseDI	CCNNGG	3 cut(s)	318, 451, 546
BseGI	GGATG	5 cut(s)	43, 241, 679, 762, 889
BseJI	GATNNNNATC	3 cut(s)	42, 106, 969
BseLI	CCNNNNNNNGG	2 cut(s)	271, 800
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	5 cut(s)	73, 250, 715, 727, 794
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	6 cut(s)	64, 368, 443, 594, 916, 938
BshFI	GGCC	3 cut(s)	189, 326, 919
BshVI	ATCGAT	1 cut(s)	643
BslFI	GGGAC	2 cut(s)	374, 484
BslI	CCNNNNNNNGG	2 cut(s)	271, 800
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	2 cut(s)	374, 484
BsnI	GGCC	3 cut(s)	189, 326, 919
Bso31I	GGTCTC	1 cut(s)	809
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	3 cut(s)	189, 326, 919
BspCNI	CTCAG	1 cut(s)	797
BspDI	ATCGAT	1 cut(s)	643
BspHI	TCATGA	2 cut(s)	400, 555
BspMAI	CTGCAG	1 cut(s)	934
BspPI	GGATC	2 cut(s)	214, 721
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	809
BsrI	ACTGG	5 cut(s)	73, 250, 715, 727, 794
BssECI	CCNNGG	3 cut(s)	318, 451, 546
BssMI	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	266, 367
Bst4CI	ACNGT	3 cut(s)	152, 322, 543
Bst6I	CTCTTC	2 cut(s)	399, 525
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	262, 1012
BstDEI	CTNAG	1 cut(s)	784
BstDSI	CCRYGG	2 cut(s)	318, 546
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	5 cut(s)	43, 241, 679, 762, 889
BstKTI	GATC	7 cut(s)	209, 643, 655, 708, 716, 853, 1021
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	266, 367
BstSCI	CCNGG	2 cut(s)	264, 365
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	6 cut(s)	64, 368, 443, 594, 916, 938
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	643
BsuRI	GGCC	3 cut(s)	189, 326, 919
BsuTUI	ATCGAT	1 cut(s)	643
BtgI	CCRYGG	2 cut(s)	318, 546
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	5 cut(s)	43, 241, 679, 762, 889
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	157, 643, 708
Cac8I	GCNNGC	2 cut(s)	262, 1012
CciI	TCATGA	2 cut(s)	400, 555
ClaI	ATCGAT	1 cut(s)	643
Csp6I	GTAC	4 cut(s)	97, 119, 409, 993
CviAII	CATG	6 cut(s)	143, 401, 442, 556, 615, 848
CviQI	GTAC	4 cut(s)	97, 119, 409, 993
DdeI	CTNAG	1 cut(s)	784
DpnI	GATC	7 cut(s)	208, 642, 654, 707, 715, 852, 1020
DpnII	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
DraI	TTTAAA	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	399, 525
EarI	CTCTTC	2 cut(s)	399, 525
Eco130I	CCWWGG	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	809
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	264, 365
EcoT14I	CCWWGG	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	6 cut(s)	146, 404, 445, 559, 618, 851
FaqI	GGGAC	2 cut(s)	374, 484
FatI	CATG	6 cut(s)	142, 400, 441, 555, 614, 847
FbaI	TGATCA	2 cut(s)	705, 850
Fnu4HI	GCNGC	6 cut(s)	53, 382, 432, 583, 927, 930
FokI	GGATG	5 cut(s)	30, 248, 686, 749, 896
Fsp4HI	GCNGC	6 cut(s)	53, 382, 432, 583, 927, 930
FspBI	CTAG	3 cut(s)	452, 459, 737
GluI	GCNGC	6 cut(s)	53, 382, 432, 583, 927, 930
HaeIII	GGCC	3 cut(s)	189, 326, 919
Hin1II	CATG	6 cut(s)	146, 404, 445, 559, 618, 851
HindIII	AAGCTT	2 cut(s)	296, 686
HinfI	GANTC	8 cut(s)	113, 155, 314, 437, 472, 598, 759, 970
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188III	TCNNGA	4 cut(s)	212, 401, 556, 1029
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	3 cut(s)	98, 335, 856
HpyCH4III	ACNGT	3 cut(s)	152, 322, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	784
Hsp92II	CATG	6 cut(s)	146, 404, 445, 559, 618, 851
Ksp22I	TGATCA	2 cut(s)	705, 850
Kzo9I	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	6 cut(s)	64, 368, 443, 594, 916, 938
MaeI	CTAG	3 cut(s)	452, 459, 737
MaeIII	GTNAC	2 cut(s)	61, 947
MalI	GATC	7 cut(s)	208, 642, 654, 707, 715, 852, 1020
MboI	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
MboII	GAAGA	7 cut(s)	416, 482, 507, 542, 571, 707, 1012
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	6 cut(s)	10, 222, 304, 521, 664, 887
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	3 cut(s)	323, 466, 768
MmeI	TCCRAC	3 cut(s)	114, 548, 790
MnlI	CCTC	8 cut(s)	265, 337, 526, 793, 928, 930, 984, 1060
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	351, 393
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	2 cut(s)	434, 929
MspR9I	CCNGG	2 cut(s)	266, 367
MvaI	CCWGG	2 cut(s)	266, 367
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
NlaIII	CATG	6 cut(s)	146, 404, 445, 559, 618, 851
NmuCI	GTSAC	2 cut(s)	61, 947
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	2 cut(s)	400, 555
PceI	AGGCCT	1 cut(s)	919
PfeI	GAWTC	5 cut(s)	113, 155, 437, 598, 970
PflFI	GACNNNGTC	1 cut(s)	313
PkrI	GCNGC	6 cut(s)	54, 383, 433, 584, 928, 931
PleI	GAGTC	3 cut(s)	322, 466, 767
PpsI	GAGTC	3 cut(s)	322, 466, 767
Psp6I	CCWGG	2 cut(s)	264, 365
PspGI	CCWGG	2 cut(s)	264, 365
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	313
PvuII	CAGCTG	2 cut(s)	434, 929
RsaI	GTAC	4 cut(s)	98, 120, 410, 994
RsaNI	GTAC	4 cut(s)	97, 119, 409, 993
SaqAI	TTAA	2 cut(s)	351, 393
SatI	GCNGC	6 cut(s)	53, 382, 432, 583, 927, 930
Sau3AI	GATC	7 cut(s)	206, 640, 652, 705, 713, 850, 1018
SchI	GAGTC	3 cut(s)	323, 466, 768
ScrFI	CCNGG	2 cut(s)	266, 367
SduI	GDGCHC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	930
SfuI	TTCGAA	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	6 cut(s)	10, 222, 304, 521, 664, 887
SseBI	AGGCCT	1 cut(s)	919
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	3 cut(s)	452, 459, 737
StuI	AGGCCT	1 cut(s)	919
StyD4I	CCNGG	2 cut(s)	264, 365
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	3 cut(s)	152, 322, 543
TaqI	TCGA	2 cut(s)	493, 643
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	6 cut(s)	10, 222, 304, 521, 664, 887
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	5 cut(s)	113, 155, 437, 598, 970
Tru1I	TTAA	2 cut(s)	351, 393
Tru9I	TTAA	2 cut(s)	351, 393
TscAI	CASTG	3 cut(s)	157, 643, 715
TseFI	GTSAC	2 cut(s)	61, 947
TseI	GCWGC	6 cut(s)	52, 381, 431, 582, 926, 929
Tsp45I	GTSAC	2 cut(s)	61, 947
TspGWI	ACGGA	3 cut(s)	106, 248, 535
TspRI	CASTG	3 cut(s)	157, 643, 715
Tth111I	GACNNNGTC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	3 cut(s)	10, 521, 664
XmaJI	CCTAGG	1 cut(s)	451
XspI	CTAG	3 cut(s)	452, 459, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.