Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Forward (+)

68984280 .. 68991185

Gene Structure 6906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG489700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGACCTCCATGATAGTCCACCAAACCAACAACGCAGATGAAAACAAAACAGAGGTGATACTCTGTGAAAATAATTCCCAAAAGGTTGAGGAAGAATCGGTGGAAGTAAATCTTAGGGATGCAATCAATAGACTTATAAACTTGACCGCATCTACCATTGCCTTTGGAGATGATGAAGGTTGTATTAAGGAGGATTACATCTCCGACATGACTTTTTCAGCTGATTCCATGAAACTCCTGGGAACTAGGGTGGCATTCTTGTGCTGGAACCTCAACCCTGGAAGTCTTGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

98

Amino Acids

10.9

Weight (kDa)

4.29

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	237, 277
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	239, 279
BfaI	CTAG	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	239, 279
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	239, 279
BmsI	GCATC	2 cut(s)	109, 158
BsaJI	CCNNGG	2 cut(s)	238, 277
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	239, 279
BseDI	CCNNGG	2 cut(s)	238, 277
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	238, 277
Bst2UI	CCWGG	2 cut(s)	239, 279
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	239, 279
BstSCI	CCNGG	2 cut(s)	237, 277
BtsCI	GGATG	1 cut(s)	124
CviAII	CATG	3 cut(s)	10, 208, 229
CviJI	RGCY	1 cut(s)	221
CviKI_1	RGCY	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	237, 277
FaeI	CATG	3 cut(s)	13, 211, 232
FaiI	YATR	5 cut(s)	11, 137, 209, 230, 295
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	3 cut(s)	9, 207, 228
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	13, 211, 232
HinfI	GANTC	2 cut(s)	95, 224
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	13, 211, 232
LpnPI	CCDG	5 cut(s)	224, 250, 251, 264, 291
LweI	GCATC	2 cut(s)	109, 158
MaeI	CTAG	1 cut(s)	246
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	16, 46, 82, 184, 281
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	239, 279
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	239, 279
NlaIII	CATG	3 cut(s)	13, 211, 232
NlaIV	GGNNCC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	95, 224
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	237, 277
PspGI	CCWGG	2 cut(s)	237, 277
PspN4I	GGNNCC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	239, 279
SetI	ASST	6 cut(s)	8, 57, 87, 181, 223, 273
SfaNI	GCATC	2 cut(s)	109, 158
SmiMI	CAYNNNNRTG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	237, 277
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	95, 224
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	3 cut(s)	54, 189, 245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.