Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010172.1

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

14968 .. 15562

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010172.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggttatagcgtgttggaagttcatgcacatagcgaatcttgcagagctgctcggttcttcaacggtggcagtggtaagttcttgtacattcacattgttgttgttaacatattgtggtataaccatttgggctaataagcagctattgatggattatgtagccattttgacggggtctccagaccacacaattcttgcaacggatgtggaaactggttctgctatagctcgccttgaaaatgctcatgacgatgcaatcaatagacttataaacttgaccgcatctaccattgcctctggagatgatggaggctgtattaaggtgtgggataccagacaacgatgttgctgcaattcctttgatgctcatcaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

126

Amino Acids

13.64

Weight (kDa)

4.9

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AciI	CCGC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	63, 239
AluBI	AGCT	3 cut(s)	49, 145, 230
AluI	AGCT	3 cut(s)	49, 145, 230
Alw26I	GTCTC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	49, 142, 351
BbvI	GCAGC	3 cut(s)	36, 154, 338
BccI	CCATC	2 cut(s)	145, 302
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciVI	GTATCC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	379
BfmI	CTRYAG	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	3 cut(s)	50, 143, 352
BlsI	GCNGC	3 cut(s)	51, 144, 353
BmsI	GCATC	3 cut(s)	244, 293, 355
BpmI	CTGGAG	2 cut(s)	165, 321
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	369
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	36, 154, 338
BsmAI	GTCTC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	86
BspACI	CCGC	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	67
BstAUI	TGTACA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	36, 154, 338
BsuI	GTATCC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	232
CciI	TCATGA	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	2 cut(s)	25, 248
CviJI	RGCY	6 cut(s)	49, 134, 145, 164, 230, 315
CviKI_1	RGCY	6 cut(s)	49, 134, 145, 164, 230, 315
CviQI	GTAC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	183
FaeI	CATG	2 cut(s)	28, 251
FaiI	YATR	9 cut(s)	8, 26, 32, 112, 122, 159, 227, 249, 272
FatI	CATG	2 cut(s)	24, 247
Fnu4HI	GCNGC	3 cut(s)	50, 143, 352
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	50, 143, 352
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	3 cut(s)	50, 143, 352
GsuI	CTGGAG	2 cut(s)	165, 321
Hin1II	CATG	2 cut(s)	28, 251
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	37
HpaI	GTTAAC	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188III	TCNNGA	4 cut(s)	182, 248, 300, 374
Hpy8I	GTNNAC	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	28, 44, 200, 257, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	28, 251
KspAI	GTTAAC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	195, 201, 285, 349, 359
Lsp1109I	GCAGC	3 cut(s)	36, 154, 338
LweI	GCATC	3 cut(s)	244, 293, 355
MaeI	CTAG	1 cut(s)	379
MboII	GAAGA	1 cut(s)	51
MluCI	AATT	2 cut(s)	192, 355
MnlI	CCTC	2 cut(s)	305, 307
MseI	TTAA	2 cut(s)	107, 321
MslI	CAYNNNNRTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	28, 251
PagI	TCATGA	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	51, 144, 353
PsiI	TTATAA	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	107, 321
SatI	GCNGC	3 cut(s)	50, 143, 352
SetI	ASST	4 cut(s)	51, 147, 232, 327
SfaNI	GCATC	3 cut(s)	244, 293, 355
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	192, 355
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	2 cut(s)	192, 355
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	107, 321
Tru9I	TTAA	2 cut(s)	107, 321
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	3 cut(s)	49, 142, 351
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	175
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.