MD12G1063000.v1.1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
7378815 .. 7382361
3547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1063000.v1.1.491

Sequence Viewer

Length: 1068 bp
ATGGAGATAAATTTGGGGCACTTGGCGTTTGACATTGATTTTCATCCATCGCAGCACTTGGTGACTACAGGTCTTATCAATGGCGATCTTCACTTGTACCGATATGCATCTGATTCAGTACCTCAAAGGGTGTTGGAAGTTCATGCACACAGTGAATCTTGCAGAGCTGTTCGCTTCATCAACAATGGCCAAGCAATTTTGACGGGCTCTCCCGACTGTTCAATTCTTGCAACGGATGTGGAAACTGGTGCTGCTATTGCTCGCCTCGACGAGGCTCACGGGTCTGCAGTCAATAAGCTTATAAACTTGACTGAGTCCACAGTTGCCTCTGGAGATGACGAAGGCTGTATTAAGGTGTGGGATACCAGGCAACAGTCTTGCTGCAATACTTTTAAAGCTCATGAAGAGTACATTTCTGATATGACTTTTGCGGCTGATTCCATGAAACTCCTAGGAACTAGTGGAGATGGGACTCTTTCTGTTTGCAATCTTCGAAGAAATAAAGTGCAAGCTCAATCTGAATTTTCAGAAGAGGAGCTACTGTCTGTGGTTATCATGAAGAATGGTCGGAAAGTGGTTTGCAGCTCACACATTGGGAATCTGTTATTGTACTCATGGGGATCTTTCAAGGATTGCAGTGATCGATTTGTTGATCTCTCTCCGAATTCTGTTGATGTTTTGTTGAAGCTTGATGAAGATAGGTTGATCGCTGGATCTGAAACTGGACTTATCAGCCTAGTTGGTATATTACCCAACAGAGTCATCCAACCTATTGCAGAGCACTCAGAATACCCGGTTGAGGGTCTCGCTTTTTCCCATGATAAAAAGTTTCTGGGCAGTATAGCACATGATCAGATGTTGAAGCTGTGGGATATGGATGAGTTATTGCAAGGTTCGACGAAGCCTTCAAAGCCTCAAGCAGCTGTGGAGGACAGCGATAGTGATGATATGGATATGGATATTAATCCTCCAAAGTCGAACAAAGGGACAAAAAGGAAAAATGCAAGCAAAGATCGTGTTTCGGGAAGTTCAAATGATTTTTTTGCTGATTTACAGATGGAGGGTTGA

Protein Analysis

356

Amino Acids

38.86

Weight (kDa)

4.93

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 2 - 294 1.5e-97 WDR55
WD40_WDHD1_1st PF24817 6 - 135 6.5e-06 WDHD1 first WD40 domain
WD40_Prp19 PF24814 11 - 183 5.4e-16 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 12 - 161 1.9e-19 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 14 - 209 8.5e-12 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 21 - 213 1.6e-11 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 28 - 169 1.6e-13 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 36 - 165 3.3e-09 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 47 - 207 1.2e-18 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 50 - 294 4.6e-26 THOC3 beta-propeller domain
EIF3I PF24805 95 - 169 1e-05 EIF3I
Beta-prop_WDR3_2nd PF25172 104 - 208 4.9e-07 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 105 - 240 2e-12 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 133 - 294 3.7e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 302
AciI CCGC 1 cut(s) 431
AclWI GGATC 2 cut(s) 628, 721
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 10, 521, 664
AdeI CACNNNGTG 2 cut(s) 61, 152
AfaI GTAC 4 cut(s) 98, 120, 410, 611
AfiI CCNNNNNNNGG 3 cut(s) 271, 799, 800
AgsI TTSAA 6 cut(s) 222, 628, 685, 862, 909, 1032
AhdI GACNNNNNGTC 1 cut(s) 69
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 365
AluBI AGCT 9 cut(s) 167, 298, 398, 512, 538, 585, 688, 865, 923
AluI AGCT 9 cut(s) 167, 298, 398, 512, 538, 585, 688, 865, 923
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 2 cut(s) 628, 721
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 5 cut(s) 52, 251, 381, 582, 920
ApoI RAATTY 3 cut(s) 10, 521, 664
AseI ATTAAT 1 cut(s) 963
AspA2I CCTAGG 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 493
AvrII CCTAGG 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 189
BanII GRGCYC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 5 cut(s) 64, 238, 368, 594, 932
BccI CCATC 3 cut(s) 55, 461, 1051
BciT130I CCWGG 1 cut(s) 367
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 809
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 3 cut(s) 452, 459, 737
BfmI CTRYAG 2 cut(s) 66, 285
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 6 cut(s) 53, 252, 382, 432, 583, 921
BlnI CCTAGG 1 cut(s) 451
BlsI GCNGC 6 cut(s) 54, 253, 383, 433, 584, 922
Bme1390I CCNGG 2 cut(s) 367, 794
BmeRI GACNNNNNGTC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 367, 794
BmsI GCATC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 900
BpuMI CCSGG 1 cut(s) 794
Bsa29I ATCGAT 1 cut(s) 643
BsaBI GATNNNNATC 3 cut(s) 42, 106, 963
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 1 cut(s) 451
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 527, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 799, 800
Bse1I ACTGG 2 cut(s) 250, 727
Bse8I GATNNNNATC 3 cut(s) 42, 106, 963
BseBI CCWGG 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 643
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 4 cut(s) 43, 241, 762, 883
BseJI GATNNNNATC 3 cut(s) 42, 106, 963
BseLI CCNNNNNNNGG 3 cut(s) 271, 799, 800
BseMII CTCAG 2 cut(s) 303, 798
BseNI ACTGG 2 cut(s) 250, 727
BseRI GAGGAG 1 cut(s) 548
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 5 cut(s) 64, 238, 368, 594, 932
BshFI GGCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 1 cut(s) 794
BslFI GGGAC 2 cut(s) 484, 1000
BslI CCNNNNNNNGG 3 cut(s) 271, 799, 800
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 2 cut(s) 484, 1000
BsnI GGCC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 809
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 3 cut(s) 21, 209, 783
Bsp143I GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 304, 797
BspDI ATCGAT 1 cut(s) 643
BspHI TCATGA 2 cut(s) 400, 555
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 628, 721
BspT104I TTCGAA 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 809
BsrI ACTGG 2 cut(s) 250, 727
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 5 cut(s) 152, 218, 322, 375, 543
Bst6I CTCTTC 2 cut(s) 399, 525
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 3 cut(s) 262, 510, 1006
BstDEI CTNAG 2 cut(s) 312, 784
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 4 cut(s) 43, 241, 762, 883
BstKTI GATC 8 cut(s) 88, 623, 643, 655, 708, 716, 853, 1015
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 257, 910
BstNI CCWGG 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 365, 792
BstSFI CTRYAG 2 cut(s) 66, 285
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 5 cut(s) 64, 238, 368, 594, 932
BstX2I RGATCY 2 cut(s) 620, 713
BstYI RGATCY 2 cut(s) 620, 713
Bsu15I ATCGAT 1 cut(s) 643
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 643
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 43, 241, 762, 883
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 157, 643
Cac8I GCNNGC 3 cut(s) 262, 510, 1006
CciI TCATGA 2 cut(s) 400, 555
ClaI ATCGAT 1 cut(s) 643
Csp6I GTAC 4 cut(s) 97, 119, 409, 610
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 7 cut(s) 143, 401, 442, 556, 615, 818, 848
CviQI GTAC 4 cut(s) 97, 119, 409, 610
DdeI CTNAG 2 cut(s) 312, 784
DpnI GATC 8 cut(s) 87, 622, 642, 654, 707, 715, 852, 1014
DpnII GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
DraI TTTAAA 1 cut(s) 394
DraIII CACNNNGTG 2 cut(s) 61, 152
DriI GACNNNNNGTC 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 399, 525
Eam1105I GACNNNNNGTC 1 cut(s) 69
EarI CTCTTC 2 cut(s) 399, 525
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 809
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 7 cut(s) 146, 404, 445, 559, 618, 821, 851
FaqI GGGAC 2 cut(s) 484, 1000
FatI CATG 7 cut(s) 142, 400, 441, 555, 614, 817, 847
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 6 cut(s) 53, 252, 382, 432, 583, 921
FokI GGATG 4 cut(s) 30, 248, 749, 890
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 6 cut(s) 53, 252, 382, 432, 583, 921
FspBI CTAG 3 cut(s) 452, 459, 737
GluI GCNGC 6 cut(s) 53, 252, 382, 432, 583, 921
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 794
Hin1II CATG 7 cut(s) 146, 404, 445, 559, 618, 821, 851
HindIII AAGCTT 2 cut(s) 296, 686
HinfI GANTC 7 cut(s) 113, 155, 314, 437, 472, 598, 759
HpaII CCGG 1 cut(s) 794
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 9 cut(s) 112, 418, 520, 529, 570, 663, 718, 787, 855
Hpy188III TCNNGA 5 cut(s) 212, 330, 401, 556, 1023
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 272, 901
HpyAV CCTTC 2 cut(s) 335, 915
HpyCH4III ACNGT 5 cut(s) 152, 218, 322, 375, 543
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 910
HpyF3I CTNAG 2 cut(s) 312, 784
Hsp92II CATG 7 cut(s) 146, 404, 445, 559, 618, 821, 851
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 9 cut(s) 54, 231, 315, 352, 379, 696, 708, 807, 818
Lsp1109I GCAGC 5 cut(s) 64, 238, 368, 594, 932
LweI GCATC 1 cut(s) 116
MaeI CTAG 3 cut(s) 452, 459, 737
MaeIII GTNAC 1 cut(s) 61
MalI GATC 8 cut(s) 87, 622, 642, 654, 707, 715, 852, 1014
MboI GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
MboII GAAGA 7 cut(s) 80, 416, 482, 507, 542, 571, 707
MflI RGATCY 2 cut(s) 620, 713
MhlI GDGCHC 3 cut(s) 21, 209, 783
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 5 cut(s) 10, 195, 222, 521, 664
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 3 cut(s) 323, 466, 768
MmeI TCCRAC 3 cut(s) 114, 548, 790
Mox20I TGGCCA 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 109
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 351, 393, 963
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 367, 794
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 257, 910
NciI CCSGG 1 cut(s) 794
NdeII GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
NlaIII CATG 7 cut(s) 146, 404, 445, 559, 618, 821, 851
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 109
NspV TTCGAA 1 cut(s) 493
PagI TCATGA 2 cut(s) 400, 555
PfeI GAWTC 4 cut(s) 113, 155, 437, 598
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 6 cut(s) 54, 253, 383, 433, 584, 922
PleI GAGTC 3 cut(s) 322, 466, 767
PpsI GAGTC 3 cut(s) 322, 466, 767
PshBI ATTAAT 1 cut(s) 963
PsiI TTATAA 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 620, 713
PsyI GACNNNGTC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 4 cut(s) 98, 120, 410, 611
RsaNI GTAC 4 cut(s) 97, 119, 409, 610
SaqAI TTAA 3 cut(s) 351, 393, 963
SatI GCNGC 6 cut(s) 53, 252, 382, 432, 583, 921
Sau3AI GATC 8 cut(s) 85, 620, 640, 652, 705, 713, 850, 1012
SchI GAGTC 3 cut(s) 323, 466, 768
ScrFI CCNGG 2 cut(s) 367, 794
SduI GDGCHC 3 cut(s) 21, 209, 783
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 2 cut(s) 66, 285
SfuI TTCGAA 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 915
SmoI CTYRAG 1 cut(s) 915
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 5 cut(s) 10, 195, 222, 521, 664
SsiI CCGC 1 cut(s) 431
SspMI CTAG 3 cut(s) 452, 459, 737
StyD4I CCNGG 2 cut(s) 365, 792
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 5 cut(s) 152, 218, 322, 375, 543
TaqI TCGA 5 cut(s) 267, 493, 643, 896, 977
TasI AATT 5 cut(s) 10, 195, 222, 521, 664
TatI WGTACW 2 cut(s) 408, 609
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 4 cut(s) 113, 155, 437, 598
Tru1I TTAA 3 cut(s) 351, 393, 963
Tru9I TTAA 3 cut(s) 351, 393, 963
TscAI CASTG 2 cut(s) 157, 643
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 5 cut(s) 52, 251, 381, 582, 920
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 7 cut(s) 32, 131, 166, 417, 458, 572, 708
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 2 cut(s) 157, 643
Tth111I GACNNNGTC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 963
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 3 cut(s) 10, 521, 664
XmaJI CCTAGG 1 cut(s) 451
XspI CTAG 3 cut(s) 452, 459, 737
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.