Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003439

Physical Location & Seq

Genomic Coordinates Reverse (-)

16638687 .. 16642784

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22900.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAATAAGCTTGGGGAAAGTGGCGTTTGACCTCGATTTTCATCCATCAGAGCAATTAGTGACTGCAGGTCTCATTGATGGTGACCTTCACTTATACCGATATTCATCTGGTTCAGTACCTCAAAGAGTGTTGGAAGTACATGCACACAGCGAATCTTGCAGAGCTGCTCGATTTGTGAATGGGGGCAGTGCCATTTTGACGGGGTCTCCAGACCACACAATTCTTGCAACGGATGTGGAAACTGGTTCTGCTATCGCTCGCCTTGAAAATGCTCATGAGGATGCAATTAATAGACTTATAAACTTGACTGCGTCCACCATTGCCTCGGGTGATGATAAAGGCTGTATTAAGGTCTGGGATACCAGACAACGATCTTGCTGCAATTCATTTAACGCTCATGAGGACTACATCTCCGATATGACTTTTTCATCTGATTCCATGAAACTCCTGGGAACTAGTGGGGATGGAACTCTGTCTGTTTGCAATCTTCGAAAAAATAAGGTCCAAGCTAAATCTGAGTTTTCAGAAGACGAGTTACTATCTGTTGTTATCATGAAGAATCGTCAGAAAGTTGTTTGCAGCTCACAAACCGGGAATATATTGTTATATTCATGGGGTTGTTTCAAGGATTGTAGTGATCGTTTTATTGATCTCTCTCCAAATTCTGTTGATGCTTTGTTGAAGCTTGATGAAGATAGACTTATTGCTGCATCAGAGACCGGACTTATCAGCCTAGTAGGCATATTACCAAACAGAATCATCCAACCAATTGCAGAGCACTCAGATTATCCAGTAGAGCGTCTAGCTTTTTCTCATGATAAAAAGTTTCTGGGCAGTATAGCACATGACCAGCTGTTAAAGCTGTGGGATATGGATGATATATTGCAAGGCTCTGGAACTACTTCAAGGACTGAAGCAACTGTGGGGGACAGTGATAGTGATGAGATGGATACAGATATTACTCCAAAGTCTAGAAAAGGAACAAAGAGAAAAAATGCAAGCAAAGATCATGTTACGGGTTCACAAAACTTTTTTGCCGATTTACAGATGGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009790 GO:0009791 GO:0009793 GO:0009799 GO:0009855 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022613 GO:0030154 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0040007 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048316 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

354

Amino Acids

38.61

Weight (kDa)

5.08

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	2 - 270	8.5e-85	WDR55
WD40_Prp19	PF24814	11 - 186	6.1e-17	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	12 - 103	1.5e-07	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	12 - 206	5.3e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	12 - 172	1.3e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	14 - 204	2.1e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	20 - 207	6.3e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	44 - 165	3.3e-09	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	47 - 205	4.5e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	50 - 211	2.2e-16	THOC3 beta-propeller domain
EIF3I	PF24805	88 - 193	1e-06	EIF3I
Beta-prop_WDR3_2nd	PF25172	105 - 223	6e-07	WDR3 second beta-propeller domain
Beta-prop_Vps41	PF23411	105 - 265	4.3e-06	Vps42 beta-propeller
Beta-prop_WDR3_1st	PF25173	106 - 239	1.3e-12	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	112 - 238	2.5e-06	Echinoderm microtubule-associated protein first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34260 AT2G34260
fragaria_vesca	FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900 FvH4_6g22900
malus_domestica	MD12G1063000.v1.1 MD14G1063600.v1.1
prunus_persica	Prupe.7G070600_v2.0.a1
pyrus_communis	pycom12g05550 pycom14g05140
rosa_chinensis	RchiOBHm_Chr3g0480691 RchiOBHm_Chr4g0410631 RchiOBHm_Chr5g0032061
rosa_laevigata	RLG00000023461
rosa_multiflora	Rmu_sc0001135.1_g000010 Rmu_sc0006144.1_g000003 Rmu_sc0010172.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355420 Rroxscaffold_6G00401160
rosa_rugosa	Rorug03G0184600 Rorug03G0184700.1
rosa_samantha	Rh3AG237000 Rh3BG270100 Rh3DG262400 Rh4AG161900 Rh4AG162000 Rh4BG160900 Rh4BG161000 Rh4CG174900 Rh4CG175000 Rh4DG157800 Rh7AG489700
rosa_wichuraiana	Rw3G021220 Rw4G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	2 cut(s)	120, 141
AgsI	TTSAA	4 cut(s)	269, 628, 685, 909
AhdI	GACNNNNNGTC	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	8 cut(s)	12, 167, 512, 585, 688, 809, 856, 865
AluI	AGCT	8 cut(s)	12, 167, 512, 585, 688, 809, 856, 865
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	77, 213, 713
Ama87I	CYCGRG	1 cut(s)	328
ApeKI	GCWGC	4 cut(s)	167, 381, 582, 710
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	904
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	95, 344
AsuII	TTCGAA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	4 cut(s)	154, 368, 594, 697
BccI	CCATC	6 cut(s)	55, 74, 461, 943, 1045, 1049
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	1 cut(s)	452
BciVI	GTATCC	2 cut(s)	355, 946
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	77, 213, 713
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	4 cut(s)	459, 737, 806, 975
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	59
BfuI	GTATCC	2 cut(s)	355, 946
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	4 cut(s)	168, 382, 583, 711
BlsI	GCNGC	4 cut(s)	169, 383, 584, 712
Bme1390I	CCNGG	2 cut(s)	452, 595
Bme18I	GGWCC	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	452, 595
BmsI	GCATC	3 cut(s)	274, 664, 722
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	595
BsaBI	GATNNNNATC	2 cut(s)	42, 106
BsaI	GGTCTC	3 cut(s)	77, 213, 713
BsaJI	CCNNGG	2 cut(s)	327, 451
BsaWI	WCCGGW	1 cut(s)	722
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 398, 428
Bse1I	ACTGG	2 cut(s)	250, 794
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	42, 106
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	327, 451
BseGI	GGATG	7 cut(s)	43, 241, 289, 472, 762, 883, 1060
BseJI	GATNNNNATC	2 cut(s)	42, 106
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	510, 798
BseNI	ACTGG	2 cut(s)	250, 794
BseXI	GCAGC	4 cut(s)	154, 368, 594, 697
BsiHKAI	GWGCWC	1 cut(s)	783
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	2 cut(s)	594, 723
BslFI	GGGAC	1 cut(s)	944
BsmAI	GTCTC	3 cut(s)	77, 213, 713
BsmFI	GGGAC	1 cut(s)	944
Bso31I	GGTCTC	3 cut(s)	77, 213, 713
BsoBI	CYCGRG	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	4 cut(s)	374, 640, 652, 1009
BspCNI	CTCAG	2 cut(s)	511, 797
BspHI	TCATGA	4 cut(s)	277, 400, 555, 817
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	493
BspTNI	GGTCTC	3 cut(s)	77, 213, 713
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	250, 794
BssECI	CCNNGG	2 cut(s)	327, 451
BssMI	GATC	4 cut(s)	374, 640, 652, 1009
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	925, 935
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	262, 1003
BstDEI	CTNAG	2 cut(s)	519, 784
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	7 cut(s)	43, 241, 289, 472, 762, 883, 1060
BstKTI	GATC	4 cut(s)	377, 643, 655, 1012
BstMAI	GTCTC	3 cut(s)	77, 213, 713
BstMBI	GATC	4 cut(s)	374, 640, 652, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 741, 862
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	450, 593
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	154, 368, 594, 697
BstV2I	GAAGAC	1 cut(s)	537
BsuI	GTATCC	2 cut(s)	355, 946
BtsCI	GGATG	7 cut(s)	43, 241, 289, 472, 762, 883, 1060
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	196, 940
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	262, 1003
CciI	TCATGA	4 cut(s)	277, 400, 555, 817
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	2 cut(s)	303, 791
Csp6I	GTAC	2 cut(s)	119, 140
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	9 cut(s)	143, 278, 401, 442, 556, 615, 818, 848, 1013
CviQI	GTAC	2 cut(s)	119, 140
DdeI	CTNAG	2 cut(s)	519, 784
DpnI	GATC	4 cut(s)	376, 642, 654, 1011
DpnII	GATC	4 cut(s)	374, 640, 652, 1009
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco31I	GGTCTC	3 cut(s)	77, 213, 713
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	936
Eco88I	CYCGRG	1 cut(s)	328
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	450
FaeI	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1016
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	9 cut(s)	142, 277, 400, 441, 555, 614, 817, 847, 1012
Fnu4HI	GCNGC	4 cut(s)	168, 382, 583, 711
FokI	GGATG	6 cut(s)	30, 248, 296, 479, 749, 890
Fsp4HI	GCNGC	4 cut(s)	168, 382, 583, 711
FspBI	CTAG	4 cut(s)	459, 737, 806, 975
GluI	GCNGC	4 cut(s)	168, 382, 583, 711
GsuI	CTGGAG	1 cut(s)	195
HapII	CCGG	2 cut(s)	594, 723
HgaI	GACGC	2 cut(s)	303, 791
Hin1II	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1016
HindIII	AAGCTT	2 cut(s)	10, 686
HinfI	GANTC	4 cut(s)	155, 437, 562, 759
HpaII	CCGG	2 cut(s)	594, 723
HphI	GGTGA	2 cut(s)	95, 344
Hpy166II	GTNNAC	2 cut(s)	318, 1025
Hpy188I	TCNGA	8 cut(s)	52, 418, 436, 520, 529, 570, 718, 787
Hpy188III	TCNNGA	7 cut(s)	212, 278, 401, 556, 818, 897, 975
Hpy8I	GTNNAC	2 cut(s)	318, 1025
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	925, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 741, 862
HpyF3I	CTNAG	2 cut(s)	519, 784
Hsp92II	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1016
Kzo9I	GATC	4 cut(s)	374, 640, 652, 1009
Lsp1109I	GCAGC	4 cut(s)	154, 368, 594, 697
LweI	GCATC	3 cut(s)	274, 664, 722
MaeI	CTAG	4 cut(s)	459, 737, 806, 975
MaeIII	GTNAC	4 cut(s)	61, 83, 537, 1015
MalI	GATC	4 cut(s)	376, 642, 654, 1011
MboI	GATC	4 cut(s)	374, 640, 652, 1009
MboII	GAAGA	4 cut(s)	482, 542, 571, 707
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	6 cut(s)	56, 222, 288, 385, 664, 771
MmeI	TCCRAC	2 cut(s)	114, 790
MnlI	CCTC	5 cut(s)	44, 132, 274, 337, 397
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	4 cut(s)	291, 351, 393, 860
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	856
MspI	CCGG	2 cut(s)	594, 723
MspR9I	CCNGG	2 cut(s)	452, 595
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	159, 741, 862
NciI	CCSGG	1 cut(s)	595
NdeII	GATC	4 cut(s)	374, 640, 652, 1009
NlaIII	CATG	9 cut(s)	146, 281, 404, 445, 559, 618, 821, 851, 1016
NmuCI	GTSAC	2 cut(s)	61, 83
NspI	RCATGY	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	493
PagI	TCATGA	4 cut(s)	277, 400, 555, 817
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	155, 437, 562, 759
PflFI	GACNNNGTC	2 cut(s)	205, 313
PkrI	GCNGC	4 cut(s)	169, 383, 584, 712
PshBI	ATTAAT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	70
PsyI	GACNNNGTC	2 cut(s)	205, 313
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	2 cut(s)	120, 141
RsaNI	GTAC	2 cut(s)	119, 140
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	291, 351, 393, 860
SatI	GCNGC	4 cut(s)	168, 382, 583, 711
Sau3AI	GATC	4 cut(s)	374, 640, 652, 1009
Sau96I	GGNCC	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	452, 595
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	3 cut(s)	274, 664, 722
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	6 cut(s)	56, 222, 288, 385, 664, 771
SspMI	CTAG	4 cut(s)	459, 737, 806, 975
StyD4I	CCNGG	2 cut(s)	450, 593
TaaI	ACNGT	2 cut(s)	925, 935
TaqI	TCGA	3 cut(s)	36, 172, 493
TasI	AATT	6 cut(s)	56, 222, 288, 385, 664, 771
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	4 cut(s)	155, 437, 562, 759
Tru1I	TTAA	4 cut(s)	291, 351, 393, 860
Tru9I	TTAA	4 cut(s)	291, 351, 393, 860
TscAI	CASTG	2 cut(s)	196, 940
TseFI	GTSAC	2 cut(s)	61, 83
TseI	GCWGC	4 cut(s)	167, 381, 582, 710
Tsp45I	GTSAC	2 cut(s)	61, 83
TspDTI	ATGAA	8 cut(s)	32, 96, 378, 420, 458, 572, 603, 708
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	196, 940
Tth111I	GACNNNGTC	2 cut(s)	205, 313
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	664
XbaI	TCTAGA	1 cut(s)	974
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	4 cut(s)	459, 737, 806, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.