AT2G34570

rRNA-processing protein UTP23 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003163
Physical Location & Seq
Reverse (-)
14562892 .. 14564782
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34570.1

Sequence Viewer

Length: 846 bp
ATGAGAGTGAAGAGGCAGAAGAAAAACAGGAGAACCGTGAGATTCTTCACGGTCTGTTACGGATTCCGTCAACCCTACAAAGTCCTTTGCGACGGCACTTTCGTCCACCATCTTGTCACTAATGAGATCACTCCCGCCGACACTGCTGTCTCTGAACTCCTCGGAGGTCCCGTCAAGCTCTTCACCACCAGATGTGTGATTGCGGAGTTGGAGAAACTGGGTAAAGATTTTGCGGAATCTCTCGAAGCTGCCCAGACGCTTAATACAGCAACATGTGAGCACGAGGAGGCAAAAACAGCAGACGAGTGTTTGTCAGAGGTAATAGGGGTACAAAATACTGAGCATTTCTTCCTTGGTACTCAGGACGCGGAGTTTAGGAGAAAGCTTCAGCAGGAGTCTATAGTTCCTCTTGTGTTTGGTCTAAGGAACATACTGCTGATTGATCAACCTTCTGATTTCCAACGTCAGAGTGCCAAAGACTCTGAAAATAAGCGCTTAACTATGACCGATACGGAAAAAAAGTTGTTGGTGAAACGGACTGCGAAAATCATAGCTTCTAATAGAAAAGAAGCAACAATTGCAAATGAAGAATGGGGAATGCCTCGAGTAGTTTCTACAAAAAATGGACTTGGTGTGAAGGATAGACCTCAGTTCAAGCGAAATAGAGCCAAGGGTCCAAACCCACTTTCATGCATGAAGAAAAAGAAGGAGAATCCTCAATCCAAATCCAAAGCCGATTCTAACTCTAATGCACAAAAGGAAAAGAAAGAAGGCGGGAGCGATACACAAAAGAGGTCAAGAAAACGGTCAAAAAAAGGAAAGTCTGGTCCGGAGAGAACCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

281

Amino Acids

31.79

Weight (kDa)

9.79

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 53 - 148 2.8e-25 Fcf1
UTP23_sensor PF24779 218 - 236 4.8e-08 UTP23 sensor motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccII CGCG 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 5 cut(s) 135, 203, 233, 368, 774
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 2 cut(s) 330, 358
AfeI AGCGCT 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 1 cut(s) 655
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AluBI AGCT 4 cut(s) 178, 248, 385, 554
AluI AGCT 4 cut(s) 178, 248, 385, 554
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 829
Aor51HI AGCGCT 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 167, 674, 827
AsuHPI GGTGA 2 cut(s) 175, 541
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 3 cut(s) 167, 674, 827
BauI CACGAG 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 109
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 496
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme18I GGWCC 3 cut(s) 167, 674, 827
BmeT110I CYCGRG 1 cut(s) 603
BmgT120I GGNCC 3 cut(s) 167, 674, 827
BmiI GGNNCC 2 cut(s) 169, 675
BmrI ACTGGG 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 160, 352, 669
BsaWI WCCGGW 1 cut(s) 829
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 222
BseAI TCCGGA 1 cut(s) 829
BseDI CCNNGG 3 cut(s) 160, 352, 669
BseMII CTCAG 3 cut(s) 330, 374, 662
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 149, 299
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 603
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 2 cut(s) 126, 442
BspACI CCGC 5 cut(s) 135, 203, 233, 368, 774
BspCNI CTCAG 3 cut(s) 331, 373, 661
BspEI TCCGGA 1 cut(s) 829
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 2 cut(s) 169, 675
BspQI GCTCTTC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 160, 352, 669
BssMI GATC 2 cut(s) 126, 442
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 352, 669
Bst2BI CACGAG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 37, 52, 807
Bst6I CTCTTC 2 cut(s) 5, 185
BstAPI GCANNNNNTGC 1 cut(s) 578
BstDEI CTNAG 4 cut(s) 339, 360, 422, 648
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 2 cut(s) 129, 445
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 126, 442
BstMWI GCNNNNNNNGC 3 cut(s) 143, 296, 578
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 3 cut(s) 167, 674, 827
CseI GACGC 2 cut(s) 265, 374
Csp6I GTAC 2 cut(s) 329, 357
CviAII CATG 3 cut(s) 273, 690, 694
CviJI RGCY 6 cut(s) 178, 248, 385, 554, 668, 734
CviKI_1 RGCY 6 cut(s) 178, 248, 385, 554, 668, 734
CviQI GTAC 2 cut(s) 329, 357
DdeI CTNAG 4 cut(s) 339, 360, 422, 648
DpnI GATC 2 cut(s) 128, 444
DpnII GATC 2 cut(s) 126, 442
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 2 cut(s) 5, 185
EarI CTCTTC 2 cut(s) 5, 185
Eco130I CCWWGG 2 cut(s) 352, 669
Eco47I GGWCC 3 cut(s) 167, 674, 827
Eco47III AGCGCT 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 167
EcoT14I CCWWGG 2 cut(s) 352, 669
EcoT22I ATGCAT 1 cut(s) 695
ErhI CCWWGG 2 cut(s) 352, 669
FaeI CATG 3 cut(s) 276, 693, 697
FaiI YATR 7 cut(s) 274, 401, 431, 503, 551, 691, 695
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 272, 689, 693
FauI CCCGC 2 cut(s) 142, 767
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 494
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 496
HapII CCGG 1 cut(s) 830
HgaI GACGC 2 cut(s) 265, 374
HhaI GCGC 1 cut(s) 495
Hin1II CATG 3 cut(s) 276, 693, 697
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 1 cut(s) 71
HindII GTYRAC 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 7 cut(s) 42, 63, 236, 395, 479, 712, 737
HpaII CCGG 1 cut(s) 830
HphI GGTGA 2 cut(s) 175, 541
Hpy166II GTNNAC 2 cut(s) 71, 106
Hpy188I TCNGA 6 cut(s) 154, 164, 316, 454, 468, 484
Hpy188III TCNNGA 4 cut(s) 242, 362, 798, 830
Hpy8I GTNNAC 2 cut(s) 71, 106
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 459, 631, 700, 764
HpyCH4III ACNGT 3 cut(s) 37, 52, 807
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 581, 693, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 296, 578
HpyF3I CTNAG 4 cut(s) 339, 360, 422, 648
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 3 cut(s) 276, 693, 697
HspAI GCGC 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 126, 442
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 777
LpnPI CCDG 7 cut(s) 13, 202, 203, 266, 347, 377, 810
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 2 cut(s) 56, 115
MalI GATC 2 cut(s) 128, 444
MboI GATC 2 cut(s) 126, 442
MboII GAAGA 7 cut(s) 22, 31, 37, 172, 340, 599, 709
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 576
MlyI GAGTC 2 cut(s) 404, 473
MmeI TCCRAC 2 cut(s) 189, 484
Mph1103I ATGCAT 1 cut(s) 695
MroI TCCGGA 1 cut(s) 829
MseI TTAA 2 cut(s) 261, 497
MslI CAYNNNNRTG 1 cut(s) 688
MspI CCGG 1 cut(s) 830
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 603
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 143, 296, 578
NdeII GATC 2 cut(s) 126, 442
NlaIII CATG 3 cut(s) 276, 693, 697
NlaIV GGNNCC 2 cut(s) 169, 675
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 603
PciI ACATGT 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 168
PctI GAATGC 1 cut(s) 603
PfeI GAWTC 5 cut(s) 42, 63, 236, 712, 737
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 2 cut(s) 403, 473
PpsI GAGTC 2 cut(s) 403, 473
PpuMI RGGWCCY 1 cut(s) 167
PscI ACATGT 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 169, 675
PspPI GGNCC 3 cut(s) 167, 674, 827
PspPPI RGGWCCY 1 cut(s) 167
PspXI VCTCGAGB 1 cut(s) 603
RsaI GTAC 2 cut(s) 330, 358
RsaNI GTAC 2 cut(s) 329, 357
RseI CAYNNNNRTG 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 261, 497
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 126, 442
Sau96I GGNCC 3 cut(s) 167, 674, 827
SchI GAGTC 2 cut(s) 404, 473
SduI GDGCHC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 3 cut(s) 167, 674, 827
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 688
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 1 cut(s) 576
SsiI CCGC 5 cut(s) 135, 203, 233, 368, 774
StyI CCWWGG 2 cut(s) 352, 669
TaaI ACNGT 3 cut(s) 37, 52, 807
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 243, 604
TaqII GACCGA 1 cut(s) 521
TasI AATT 1 cut(s) 576
TfiI GAWTC 5 cut(s) 42, 63, 236, 712, 737
Tru1I TTAA 2 cut(s) 261, 497
Tru9I TTAA 2 cut(s) 261, 497
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 600, 678, 710
TspGWI ACGGA 4 cut(s) 56, 75, 527, 550
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 3 cut(s) 167, 674, 827
XceI RCATGY 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.