Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Reverse (-)

21172708 .. 21179601

Gene Structure 6894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG146600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCTCTCCGACTTCGACCTCTGCTTCAAATCTGACGTCGTTCCGACCTTCGAGCGCCTCCCGGTCGAAAATCAAGGGGATCCGCCAACTGCTTCGGATCGGGATATTTCTATTTCAGGAGGACACAAAATGAGAGTGAAGAAGCAGAAGCGTCATAGGAAGATTGTGCGGTTCTACACAGCATGTTATGGGTTCAGACAGCCGTATAAGGTTCTCTGTGATGTCACTTTTGTGCACCACCTTGTCACCCATCGCATCACTCCTGCTGACAAGGCCCTTTCTCATATCCTTGGTGCCCCTGTCACGCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAAAATTCTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAACGCCAGTTCGTCAAAACTTCTGAAGAACAACGTTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCGAAGAATATGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTCTTGAAAAGAAGCGTACTACTAGGAAAGAATTAGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCCAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTGTGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

325

Amino Acids

36.75

Weight (kDa)

9.6

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	96 - 195	2.7e-24	Fcf1
UTP23_sensor	PF24779	270 - 287	3.4e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	293, 586
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	3 cut(s)	83, 169, 931
AclI	AACGTT	1 cut(s)	634
AclWI	GGATC	3 cut(s)	74, 87, 105
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	645
AcyI	GRCGYC	2 cut(s)	36, 587
AfaI	GTAC	1 cut(s)	769
AfiI	CCNNNNNNNGG	3 cut(s)	359, 915, 964
AgsI	TTSAA	6 cut(s)	28, 340, 386, 758, 868, 882
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	4 cut(s)	674, 706, 826, 858
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	2 cut(s)	237, 486
Alw26I	GTCTC	1 cut(s)	384
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	74, 87, 105
AoxI	GGCC	1 cut(s)	273
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	2 cut(s)	389, 596
ApoI	RAATTY	1 cut(s)	525
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	2 cut(s)	57, 589
AspS9I	GGNCC	4 cut(s)	274, 350, 362, 830
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	3 cut(s)	350, 362, 830
BaeGI	GKGCMC	2 cut(s)	237, 298
BaeI	ACNNNNGTAYC	2 cut(s)	897, 930
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	2 cut(s)	293, 586
Bbv12I	GWGCWC	2 cut(s)	237, 486
BbvI	GCAGC	2 cut(s)	376, 583
BccI	CCATC	3 cut(s)	258, 598, 965
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	774
BfoI	RGCGCY	2 cut(s)	58, 590
BisI	GCNGC	2 cut(s)	390, 597
BlsI	GCNGC	2 cut(s)	391, 598
Bme1390I	CCNGG	2 cut(s)	62, 540
Bme18I	GGWCC	3 cut(s)	350, 362, 830
BmgT120I	GGNCC	4 cut(s)	274, 350, 362, 830
BmiI	GGNNCC	5 cut(s)	81, 295, 364, 588, 831
BmrFI	CCNGG	2 cut(s)	62, 540
BmsI	GCATC	3 cut(s)	264, 333, 459
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	515, 602
BpuMI	CCSGG	1 cut(s)	62
BsaHI	GRCGYC	2 cut(s)	36, 587
BsaJI	CCNNGG	2 cut(s)	289, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	359, 915, 964
Bse1I	ACTGG	2 cut(s)	607, 909
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	289, 358
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	3 cut(s)	359, 915, 964
BseMII	CTCAG	3 cut(s)	324, 515, 554
BseNI	ACTGG	2 cut(s)	607, 909
BseRI	GAGGAG	1 cut(s)	931
BseSI	GKGCMC	2 cut(s)	237, 298
BseXI	GCAGC	2 cut(s)	376, 583
BsgI	GTGCAG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	293, 586
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	237, 486
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	348, 530
BslI	CCNNNNNNNGG	3 cut(s)	359, 915, 964
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	348, 530
BsnI	GGCC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	3 cut(s)	237, 298, 486
Bsp143I	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
BspACI	CCGC	3 cut(s)	83, 169, 931
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	325, 514, 555
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	5 cut(s)	81, 295, 364, 588, 831
BspPI	GGATC	3 cut(s)	74, 87, 105
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	293, 586
BsrI	ACTGG	2 cut(s)	607, 909
BssECI	CCNNGG	2 cut(s)	289, 358
BssMI	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	2 cut(s)	36, 587
BssT1I	CCWWGG	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	929
BstACI	GRCGYC	2 cut(s)	36, 587
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	507, 750
BstDEI	CTNAG	3 cut(s)	333, 501, 563
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	2 cut(s)	58, 590
BstHHI	GCGC	2 cut(s)	57, 589
BstKTI	GATC	6 cut(s)	82, 100, 421, 514, 733, 941
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 437, 586, 593
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	60, 538
BstSLI	GKGCMC	2 cut(s)	237, 298
BstV1I	GCAGC	2 cut(s)	376, 583
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	916
Cac8I	GCNNGC	2 cut(s)	507, 750
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	2 cut(s)	57, 589
Cfr13I	GGNCC	4 cut(s)	274, 350, 362, 830
CpoI	CGGWCCG	1 cut(s)	350
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	768
CspI	CGGWCCG	1 cut(s)	350
CviAII	CATG	5 cut(s)	183, 422, 433, 454, 846
CviJI	RGCY	9 cut(s)	202, 275, 357, 389, 399, 431, 509, 752, 853
CviKI_1	RGCY	9 cut(s)	202, 275, 357, 389, 399, 431, 509, 752, 853
CviQI	GTAC	1 cut(s)	768
DdeI	CTNAG	3 cut(s)	333, 501, 563
DinI	GGCGCC	1 cut(s)	588
DpnI	GATC	6 cut(s)	81, 99, 420, 513, 732, 940
DpnII	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	350, 362, 830
Eco57I	CTGAAG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	588
EheI	GGCGCC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	5 cut(s)	186, 425, 436, 457, 849
FaqI	GGGAC	2 cut(s)	348, 530
FatI	CATG	5 cut(s)	182, 421, 432, 453, 845
FauNDI	CATATG	1 cut(s)	642
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	390, 597
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	390, 597
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	2 cut(s)	56, 588
GluI	GCNGC	2 cut(s)	390, 597
HaeII	RGCGCY	2 cut(s)	58, 590
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	57, 589
Hin1I	GRCGYC	2 cut(s)	36, 587
Hin1II	CATG	5 cut(s)	186, 425, 436, 457, 849
Hin6I	GCGC	2 cut(s)	55, 587
HinP1I	GCGC	2 cut(s)	55, 587
HinfI	GANTC	4 cut(s)	377, 535, 701, 878
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	235, 556
Hpy188III	TCNNGA	6 cut(s)	101, 117, 383, 422, 532, 755
Hpy8I	GTNNAC	2 cut(s)	235, 556
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	58, 880, 958
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	36, 634
HpyCH4V	TGCA	6 cut(s)	235, 346, 410, 450, 640, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 437, 586, 593
HpyF3I	CTNAG	3 cut(s)	333, 501, 563
HpySE526I	ACGT	2 cut(s)	36, 634
Hsp92I	GRCGYC	2 cut(s)	36, 587
Hsp92II	CATG	5 cut(s)	186, 425, 436, 457, 849
HspAI	GCGC	2 cut(s)	55, 587
KasI	GGCGCC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
Lsp1109I	GCAGC	2 cut(s)	376, 583
LweI	GCATC	3 cut(s)	264, 333, 459
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	2 cut(s)	36, 634
MaeIII	GTNAC	3 cut(s)	223, 244, 301
MalI	GATC	6 cut(s)	81, 99, 420, 513, 732, 940
MboI	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
MboII	GAAGA	9 cut(s)	151, 172, 352, 506, 638, 694, 725, 914, 946
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	237, 298, 486
MluCI	AATT	3 cut(s)	475, 525, 782
Mly113I	GGCGCC	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	4 cut(s)	33, 68, 648, 672
MseI	TTAA	2 cut(s)	810, 976
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	62, 540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	272, 437, 586, 593
NarI	GGCGCC	1 cut(s)	587
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	642
NdeII	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
NlaIII	CATG	5 cut(s)	186, 425, 436, 457, 849
NlaIV	GGNNCC	5 cut(s)	81, 295, 364, 588, 831
NmuCI	GTSAC	3 cut(s)	223, 244, 301
NspI	RCATGY	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	517
OliI	CACNNNNGTG	1 cut(s)	230
PagI	TCATGA	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	535, 701, 878
PkrI	GCNGC	2 cut(s)	391, 598
PleI	GAGTC	1 cut(s)	385
PluTI	GGCGCC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	5 cut(s)	81, 295, 364, 588, 831
PspPI	GGNCC	4 cut(s)	274, 350, 362, 830
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
RseI	CAYNNNNRTG	1 cut(s)	230
Rsr2I	CGGWCCG	1 cut(s)	350
RsrII	CGGWCCG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	810, 976
SatI	GCNGC	2 cut(s)	390, 597
Sau3AI	GATC	6 cut(s)	79, 97, 418, 511, 730, 938
Sau96I	GGNCC	4 cut(s)	274, 350, 362, 830
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	62, 540
SduI	GDGCHC	3 cut(s)	237, 298, 486
SfaNI	GCATC	3 cut(s)	264, 333, 459
SfoI	GGCGCC	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	3 cut(s)	350, 362, 830
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	530, 581
SmoI	CTYRAG	2 cut(s)	530, 581
Sse9I	AATT	3 cut(s)	475, 525, 782
SsiI	CCGC	3 cut(s)	83, 169, 931
SspDI	GGCGCC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	60, 538
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	39, 637
TaqI	TCGA	4 cut(s)	15, 51, 66, 517
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	475, 525, 782
TfiI	GAWTC	3 cut(s)	535, 701, 878
Tru1I	TTAA	2 cut(s)	810, 976
Tru9I	TTAA	2 cut(s)	810, 976
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	3 cut(s)	223, 244, 301
TseI	GCWGC	2 cut(s)	389, 596
Tsp45I	GTSAC	3 cut(s)	223, 244, 301
TspDTI	ATGAA	3 cut(s)	726, 834, 915
TspGWI	ACGGA	1 cut(s)	958
TspRI	CASTG	1 cut(s)	916
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	3 cut(s)	350, 362, 830
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	1 cut(s)	774
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.